XmippPythonization

Xmipp Pythonization

• Configure the compilation with swig=yes

./scons.configure ... swig=yes

• set the PYTHONPATH variable

setenv PYTHONPATH /home/bioing/trunk/xmipp/lib

• Pythonize a whole header

%{
#include "../de_solver.h"
%}
%include "../de_solver.h"

• Pythonize a whole header except a few functions

%{
#include "../args.h"
%}

%ignore firstToken(const std::string& str);		

%include "../args.h"

• Pythonize only a few functions of a header

%{
#include "../args.h"
%}

extern firstToken(const std::string& str);		

• Invoke python

setenv PYTHONPATH /home/bioing/xmipp/lib
python
import XmippData

• Alternative Python invocation

python

import os,glob,sys
scriptdir=os.path.split(os.path.dirname(os.popen('which xmipp_protocols','r').read()))[0]+'/lib'
sys.path.append(scriptdir) # add default search path
import XmippData

-- Main.CoSS - 28 Nov 2007