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Pull requests: loculus-project/loculus

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Pull requests list

chore(deps): bump astro from 6.4.8 to 7.0.4 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6836 opened Jul 1, 2026 by dependabot Bot Loading…
chore(deps-dev): bump @astrojs/react from 5.0.7 to 6.0.0 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6835 opened Jul 1, 2026 by dependabot Bot Loading…
chore(deps): bump the patch group in /website with 7 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6834 opened Jul 1, 2026 by dependabot Bot Loading…
chore(deps): bump the minorandpatch group in /keycloak/keycloakify with 7 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6833 opened Jul 1, 2026 by dependabot Bot Loading…
chore(deps-dev): bump prettier from 3.8.4 to 3.9.4 in /website in the minor group dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6832 opened Jul 1, 2026 by dependabot Bot Loading…
chore(deps-dev): bump eslint-plugin-unicorn from 68.0.0 to 70.0.0 in /integration-tests dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6831 opened Jul 1, 2026 by dependabot Bot Loading…
chore(deps-dev): bump the minorandpatch group in /integration-tests with 6 updates dependencies Pull requests that update a dependency file format_me Triggers github_actions to format website code on PR javascript Pull requests that update Javascript code
#6830 opened Jul 1, 2026 by dependabot Bot Loading…
chore(deps): bump the minorandpatch group in /docs with 6 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6829 opened Jul 1, 2026 by dependabot Bot Loading…
chore(deps-dev): bump ruff from 0.15.17 to 0.15.20 in /loculus-silo in the minorandpatch group dependencies Pull requests that update a dependency file python Pull requests that update python code
#6828 opened Jul 1, 2026 by dependabot Bot Loading…
chore(deps): bump the minorandpatch group in /preprocessing/nextclade with 4 updates conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#6827 opened Jul 1, 2026 by dependabot Bot Loading…
chore(deps): bump the minorandpatch group in /ingest with 6 updates conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#6826 opened Jul 1, 2026 by dependabot Bot Loading…
Feature branch for Raw reads
#6817 opened Jun 30, 2026 by anna-parker Contributor • Draft
3 tasks
1
WIP feat(deposition): start raw reads automation deposition related to ENA/INSDC deposition
#6816 opened Jun 30, 2026 by anna-parker Contributor • Draft
3 tasks
5
feat(backend): keep only latest preprocessing pipeline version backend related to the loculus backend component
#6813 opened Jun 30, 2026 by corneliusroemer Contributor • Draft
1
wip(deposition): Allow notifying on manifest changes if policy is warn deposition related to ENA/INSDC deposition
#6810 opened Jun 30, 2026 by corneliusroemer Contributor • Draft
feat(observability): expose Prometheus metrics and wire ServiceMonitor backend related to the loculus backend component deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd
#6807 opened Jun 30, 2026 by clonder Contributor • Draft
4
feat(prepro): ensure all internal errors are properly logged and include proper information preprocessing Issues related to the preprocessing component
#6801 opened Jun 30, 2026 by anna-parker Contributor Loading…
2 of 3 tasks
8
test(integration-tests): add Ebola Sudan submission edge-case tests tests Test related issues
#6796 opened Jun 29, 2026 by corneliusroemer Contributor • Draft
3 tasks
1
feat(prepro): make tests more readable preprocessing Issues related to the preprocessing component
#6790 opened Jun 29, 2026 by anna-parker Contributor Loading…
3 tasks
14
refactor(website): unify modals onto BaseDialog, drop MUI modal and react-confirm-alert website Tasks related to the web application
#6780 opened Jun 29, 2026 by corneliusroemer Contributor Loading…
1
21
feat(prepro): use submissionId for displayName if specimenCollectorSampleId cannot be parsed preprocessing Issues related to the preprocessing component
#6774 opened Jun 29, 2026 by maverbiest Contributor Loading…
2 of 3 tasks
1
17
feat(prepro): basic validation of raw read submissions preprocessing Issues related to the preprocessing component preview Triggers a deployment to argocd
#6773 opened Jun 26, 2026 by maverbiest Contributor Loading…
3 tasks
16
Exploration demo for bulk revision with files backend related to the loculus backend component preview Triggers a deployment to argocd website Tasks related to the web application
#6770 opened Jun 25, 2026 by tombch Collaborator • Draft
3 tasks
feat(website): add SeqSet citations section to admin dashboard backend related to the loculus backend component preview Triggers a deployment to argocd website Tasks related to the web application
#6769 opened Jun 25, 2026 by theosanderson-agent Collaborator Loading…
12
Bulk file revision: reuse existing files without exposing fileMapping to website users backend related to the loculus backend component preview Triggers a deployment to argocd website Tasks related to the web application
#6767 opened Jun 25, 2026 by anna-parker Contributor • Draft
3 tasks
1
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