Exploration demo for bulk revision with files#6770
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…with discard files and accessing default files
…h discard all files not working for revisions
…no previous files exist in edit case
…d added comment detailing re-keying
…dit page: if we had an empty file mapping, keyed on submission id, this would display the folder upload. files would then be added, but keyed to dummy submission id. at submit time, the 'first' item in the map was accessed - the empty submission id map. I've decided to update the component to include an optional formSubmissionId, as in the edit/revise case we have the submission id already. this removes the possibility of having a mix of real id and dummy in the single edit/revise case which IMO was a bit of a footgun
… set for the submission id
…h form submission id or dummy id
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Another demo idea for #5820 :)
PR description generated by AI:
Summary
Adds bulk file revision: keep, replace, and add the files attached to a group's sequences when revising in bulk.
The "Download originally submitted data" zip now includes a
files.tsvlisting the existing files, which the bulk revise page reads back to pre-populate the files before edit and submit.Changes
Backend
get-submitted-datazip now includesfiles.tsv(one row per file:id,category,fileId,fileName) when the organism has files enabled.idreuses the metadata TSV's id so the two join on re-upload.Website
parseExistingFilesTsvparses an uploadedfiles.tsvintoFilesBySubmissionId.files.tsv) and Upload folder — both leading to the same file list.Testing
GetSubmittedDataWithFilesEndpointTest(contents, id↔metadata join, no-files case).parseExistingFilesTsvunit tests +FolderUploadComponenttests (two-drop-zone, bulk discard, overlay). Submission suite green; types/lint clean.Screenshot
PR Checklist
🚀 Preview: https://bulk-submission-revise-fi.loculus.org