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Add section with example datasets suitable for the different compareMS2 modes

duplicateThis issue or pull request already existsThis issue or pull request already exists

Status: Open.

#74 In 524D/compareMS2;

· magnuspalmblad opened on May 22, 2026

Cleaning up the README.md file

Status: Open.

#73 In 524D/compareMS2;

· magnuspalmblad opened on May 22, 2026

Define additional use cases for future development

enhancementNew feature or requestNew feature or request

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#71 In 524D/compareMS2;

· magnuspalmblad opened on May 14, 2026

Option to convert all m/z and intensity values as Integers

Status: Open.

#70 In 524D/compareMS2;

· magnuspalmblad opened on May 1, 2026

Filter spectra from a third dataset before comparison

enhancementNew feature or requestNew feature or request

Status: Open.

#66 In 524D/compareMS2;

· magnuspalmblad opened on Sep 17, 2025

Add reference data to help first-time user to get started

Status: Open.

#63 In 524D/compareMS2;

· 524D opened on Sep 4, 2025

Output intersect and complements in MGF

enhancementNew feature or requestNew feature or request

Status: Open.

#55 In 524D/compareMS2;

· magnuspalmblad opened on Jan 18, 2024

Possible intensity scaling issue for two-dataset comparison

bugSomething isn't workingSomething isn't working

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#53 In 524D/compareMS2;

· magnuspalmblad opened on Jan 3, 2024

SDRF support for CLI and GUI

enhancementNew feature or requestNew feature or request

Status: Open.

#51 In 524D/compareMS2;

· magnuspalmblad opened on Aug 9, 2023

·  

compareMS2 2.1

exporting mzQC runQuality for compareMS2 comparison with reference dataset?

enhancementNew feature or requestNew feature or request

Status: Open.

#49 In 524D/compareMS2;

· magnuspalmblad opened on Apr 18, 2023

Add (as experimental feature) summary of m/z and intensities of spectral comparisons in a specified dot product and delta-m/z range

enhancementNew feature or requestNew feature or request

Status: Open.

#42 In 524D/compareMS2;

· magnuspalmblad opened on Jun 3, 2022

Reset branch/node/root selections in phylogenetic tree?

aestheticSomething could look nicerSomething could look nicer

enhancementNew feature or requestNew feature or request

Status: Open.

#28 In 524D/compareMS2;

· magnuspalmblad opened on Nov 19, 2021