The updated code according to the developer's advice, to fit eukaryotic plastid screening - #272

Merged

wwood merged 12 commits into

Andyargueasae:main

Jul 27, 2026

Commits on Nov 18, 2025

Add split at calculating trimmed mean in Condenser.py and thus works for the singlem bespoke package for plastid markers.
Yuhao Tong
committed
3e00fba

Commits on Dec 4, 2025

found another spot where using eukaryote metapackage failed
Yuhao Tong
committed
4a7b67b

Commits on Dec 8, 2025

modify condense.py based on Ben'
Yuhao Tong
committed
0890de2

Commits on Dec 9, 2025

Modify the otu writing loop by Ben's advice, tested and passed on a sample read data
Yuhao Tong
committed
e8b9933

Commits on Jul 21, 2026

:bug: fix the condense.py by removing the hard-coded eukaryote removal in decoy sequences, replaced with target-domain matching.
Yuhao Tong
committed
620c403
:bug: fix the hard-coded issue with singlem condense
Yuhao Tong
committed
f7adca1

Commits on Jul 24, 2026

debug the default metapackage
Yuhao Tong
committed
b256ec2
:zap: fixed bug
Yuhao Tong
committed
3f162cd
:bug: fixed the condense.py bug to let it be agnostic for both bacteria/archaea and eukaryote singleM metapackages
Yuhao Tong
committed
7ed0c42

Commits on Jul 25, 2026

Merge branch 'main' into main
Andyargueasae
authored
14e92ff
:zap: Changed gitignore, and make the condense.py agnostic for both metapackages by per-spkg inspections
Yuhao Tong
committed
6148d42
Merge branch 'main' of github.com:Andyargueasae/singlem
Yuhao Tong
committed
a8bd6a4