Fast cgMLST/wgMLST allele caller with SIMD Smith-Waterman scoring (parasail) and an offline schema-side minimizer-overlap audit. 10.7–22.3× faster than chewBBACA with 100% DNA-sequence agreement on bilaterally callable cells.
rust bioinformatics genomics smith-waterman mlst cgmlst wgmlst allele-calling parasail foodborne-pathogens
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Updated
May 13, 2026 - Rust