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Is OSError an incompatibility between loompy and h5py, or does it require a specific version of loompy?

Status: Open.

#192 In linnarsson-lab/loompy;

· Li-shiyue opened on Sep 6, 2025

Count matrix: getting the celltypes

Status: Open.

#191 In linnarsson-lab/loompy;

· acycliq opened on Apr 22, 2025

Citing your work

Status: Open.

#190 In linnarsson-lab/loompy;

· DrNamwob opened on Jan 3, 2025

loom contains significantly less cells than those in "filtered_feature_bc_matrix"

Status: Open.

#182 In linnarsson-lab/loompy;

· Lei-Guo opened on Jan 5, 2024

libc++abi: terminating with uncaught exception of type std::length_error: vector/ using loompy to make loom file from fastq

Status: Open.

#177 In linnarsson-lab/loompy;

· TM9013 opened on Nov 30, 2022

h5py 3 requires file mode

Status: Open.

#169 In linnarsson-lab/loompy;

· rekado opened on Mar 31, 2022

Missing 'Vega translation ID'

Status: Open.

#168 In linnarsson-lab/loompy;

· juhjeong opened on Feb 7, 2022

combine loom issue

Status: Open.

#167 In linnarsson-lab/loompy;

· yfstkchy opened on Feb 4, 2022

add_loom function in loompy.py depends on internally deprecated batch_scan_layers

Status: Open.

#166 In linnarsson-lab/loompy;

· mcarrara-bioinfo opened on Jan 28, 2022

the mismatch of reutrn type from get_loom_spec_version

Status: Open.

#165 In linnarsson-lab/loompy;

· ygidtu opened on Dec 22, 2021

AssertionError: The two arrays are not matching

Status: Open.

#163 In linnarsson-lab/loompy;

· homomedicus opened on Dec 16, 2021

Should we pay attention to Warning: no ambient RNA beads were found; maybe sample had too few cells?

Status: Open.

#162 In linnarsson-lab/loompy;

· denvercal1234GitHub opened on Nov 20, 2021