R2D2: Reconstructing RNA Dynamics from Data

Name		Name	Last commit message	Last commit date
Latest commit History 100 Commits
examples		examples
test_suite		test_suite
.gitignore		.gitignore
LICENSE		LICENSE
LucksLabUtils_config.py		LucksLabUtils_config.py
NAU.py		NAU.py
OSU.py		OSU.py
PAU.py		PAU.py
PCSU.py		PCSU.py
R2D2.py		R2D2.py
README.md		README.md
SU.py		SU.py
VIU.py		VIU.py
analyze_cotrans_SHAPE-Seq.py		analyze_cotrans_SHAPE-Seq.py
calculate_stats_panel.py		calculate_stats_panel.py
combine_100x_DG_state_plot_dump.py		combine_100x_DG_state_plot_dump.py
find_parameters.py		find_parameters.py
generate_DG_from_dbns.py		generate_DG_from_dbns.py
generate_KineFold_DG.py		generate_KineFold_DG.py
generate_KineFold_pairs.py		generate_KineFold_pairs.py
generate_MFE_movie.py		generate_MFE_movie.py
generate_VARNA_from_pairs.py		generate_VARNA_from_pairs.py
generate_unique_struct_min_dist_plots.py		generate_unique_struct_min_dist_plots.py
make_DG_state_plot.R		make_DG_state_plot.R
make_DG_state_plot_100x.R		make_DG_state_plot_100x.R
make_DG_state_plot_100x_EQ_Rep_KineFold_figure.R		make_DG_state_plot_100x_EQ_Rep_KineFold_figure.R
make_DG_state_plot_100x_EQ_Rep_figure.R		make_DG_state_plot_100x_EQ_Rep_figure.R
make_DG_state_plot_100x_Rep_KineFold_MFE_figure.R		make_DG_state_plot_100x_Rep_KineFold_MFE_figure.R
make_DG_state_plot_100x_Rep_MFE_figure.R		make_DG_state_plot_100x_Rep_MFE_figure.R
make_DG_state_plot_100x_figure.R		make_DG_state_plot_100x_figure.R
make_SI_sample_size_determination.R		make_SI_sample_size_determination.R
make_ct_to_PCA_MDS_plots.py		make_ct_to_PCA_MDS_plots.py
make_first_sampled_subplot_MDS_PCA.py		make_first_sampled_subplot_MDS_PCA.py
make_horizontal_movies.py		make_horizontal_movies.py

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