Update ATAC-seq pipeline - #322

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marinafloresp wants to merge 17 commits into

Commits on Dec 9, 2024

Add Stage 3 QC
marinafloresp
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a985bc9

Commits on Dec 10, 2024

Commits on Dec 11, 2024

Supress R libraries loading messages
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86bb2c4
Rmarkdown lines
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13a396c
Rmarkdown lines
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6387208

Commits on Dec 12, 2024

Allow user define peak calling cutoff
marinafloresp
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6ddf3cd
Update Readme
marinafloresp
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6db4ba0

Commits on Dec 17, 2024

Add R libraries
marinafloresp
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0b7f42c
Minor updates
marinafloresp
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3a9d610

Commits on Aug 21, 2025

Update trimming step
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80d71c6
Add example file with sequences to trim
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e149b9b
Update trimming files
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d4e3262

Commits on Sep 5, 2025

Latest updated ATAC-seq pipeline
marinafloresp
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329c3b4