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[Enhancement suggestion]: Add TSS calculation to QC pipeline
ATACSeqATAC-seq dataATAC-seq dataenhancementNew feature or requestNew feature or requestStatus: Open.#342 In ejh243/BrainFANS;[Code Refactor]: FRIP file is created every time for a new batch of samples
ATACSeqATAC-seq dataATAC-seq dataenhancementNew feature or requestNew feature or requestStatus: Open.#341 In ejh243/BrainFANS;[Bug]: DNAmQC ctCheck boolean columns read as strings when NA present
bugSomething isn't workingSomething isn't workingStatus: Open.#316 In ejh243/BrainFANS;[Bug]: Library loading is not 100% quiet
bugSomething isn't workingSomething isn't workingDNAmDNA methylation arrayDNA methylation arraygood first issueGood for newcomersGood for newcomersStatus: Open.#294 In ejh243/BrainFANS;[Code Refactor]: Config file being referenced is not consistent across rmarkdown files in DNAm QC pipeline
enhancementNew feature or requestNew feature or requestStatus: Open.#292 In ejh243/BrainFANS;[Bug]: Failing to run ctCheck.rmd in DNA methylation QC pipeline
bugSomething isn't workingSomething isn't workingStatus: Open.#290 In ejh243/BrainFANS;[Bug]: Generating plots failing in DNA methylation QC
bugSomething isn't workingSomething isn't workingStatus: Open.#288 In ejh243/BrainFANS;[Documentation Fault]: Create contracts for each stage/section of DNAm QC pipeline
DNAmDNA methylation arrayDNA methylation arraydocumentationFaults in the documentationFaults in the documentationStatus: Open.#259 In ejh243/BrainFANS;[Documentation Fault]: Create a UML diagram explaining the steps for the DNAm QC pipeline
DNAmDNA methylation arrayDNA methylation arraydocumentationFaults in the documentationFaults in the documentationStatus: Open.#258 In ejh243/BrainFANS;[Code Refactor]: Orthogonalise the DNAm QC pipeline
DNAmDNA methylation arrayDNA methylation arrayenhancementNew feature or requestNew feature or requestimportantThis is importantThis is importantrefactorCode refactorCode refactorStatus: Open.#257 In ejh243/BrainFANS;[Documentation Fault]: Add example sampleSheet files
DNAmDNA methylation arrayDNA methylation arraydocumentationFaults in the documentationFaults in the documentationgood first issueGood for newcomersGood for newcomersStatus: Open.#256 In ejh243/BrainFANS;[Documentation Fault]: Poor clarity in DNAm config files
DNAmDNA methylation arrayDNA methylation arraydocumentationFaults in the documentationFaults in the documentationStatus: Open.#255 In ejh243/BrainFANS;