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feat: add normalisation violence metrics definitions #307

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feat: add normalisation violence metrics definitions #307

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8 changes: 8 additions & 0 deletions array/DNAm/preprocessing/QC.rmd
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Expand Up @@ -954,6 +954,14 @@ corrplot(cor(QCmetrics[,colsToKeep], use = "p"))

```

The correlation plot above contains four normalisation violence metrics
(assessing the degree of difference between normalised and raw betas):

* rmsd: root mean squared (of) differences
* sdd: standard deviation (of) differences
* sadd: standard absolute deviation (of) differences (|differences|)
* srms: standardised root mean squared (rmsd/sdd)


## Reconfirm genetic relationships are correct

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