API Class IceScopy

API Class: IceScopy

Main application shell and composition root for the desktop app.

Source

• Module: Icescopy
• File: src/Icescopy.py
• Line: 317

Inheritance

• Bases: QMainWindow

Purpose

Main application shell and composition root for the desktop app.

Instance Attributes

Attribute	First assigned in	Line	Explanation
active_image_panel	initData	1423	Stores active image panel.
add_folder_action	initUI	2701	Qt action object for add folder action.
add_images_action	initUI	2700	Qt action object for add images action.
analysis_progress_navigation_suppressed	initData	1386	Tracks whether analysis progress navigation suppressed.
analysis_progress_start_index	initData	1387	Zero-based index for analysis progress start index.
analysis_progress_timer	initUI	2919	Timer object used for analysis progress timer.
cell_controller	__init__	386	Stores cell controller.
cell_items	initData	1323	Stores cell items.
cell_records_by_id	initData	1326	Stores cell records by ID.
cell_state	__init__	385	State bundle for cell state.
cells_dock	initUI	3044	Dock widget reference for cells dock.
cells_panel_dirty	refresh_cells_panel	996	Tracks whether cells panel dirty.
cells_panel_force_refresh	refresh_cells_panel	1057	Stores cells panel force refresh.
cells_panel_last_snapshot	refresh_cells_panel	1055	Stores cells panel last snapshot.
cells_panel_widget	initUI	3021	Qt widget reference for cells panel widget.
cells_tree_widget	build_cells_panel	3674	Qt widget reference for cells tree widget.
circle_apply_button	build_tool_options_panel	3495	Button widget for circle apply button.
circle_cancel_button	build_tool_options_panel	3497	Button widget for circle cancel button.
circle_default_color	__init__	355	Color setting for circle default color.
circle_edit_color	__init__	358	Color setting for circle edit color.
circle_float_button	build_tool_options_panel	3496	Button widget for circle float button.
circle_hover_color	__init__	356	Color setting for circle hover color.
circle_label_offset_x	__init__	363	Geometry value for circle label offset x.
circle_label_offset_y	__init__	364	Geometry value for circle label offset y.
circle_offset_x_spinbox	build_tool_options_panel	3474	Spin box widget for circle offset x spinbox.
circle_offset_y_spinbox	build_tool_options_panel	3479	Spin box widget for circle offset y spinbox.
circle_pressed_color	__init__	359	Color setting for circle pressed color.
circle_radius	__init__	322	Radius value for circle radius.
circle_radius_spinbox	build_tool_options_panel	3469	Spin box widget for circle radius spinbox.
circle_selected_color	__init__	357	Color setting for circle selected color.
circle_tool_hint	build_tool_options_panel	3492	Help text widget or message for circle tool hint.
circle_tool_page	build_tool_options_panel	3468	Page widget for circle tool page.
clear_images_action	initUI	2703	Qt action object for clear images action.
console_dock	initUI	3041	Dock widget reference for console dock.
context_pixmap_items	initData	1411	Stores context pixmap items.
convolution_half_window_points	__init__	344	Stores convolution half window points.
convolution_ramp_points	__init__	345	Stores convolution ramp points.
current_session_file_path	initData	1426	Current value for session file path.
cursor_edit_section_label	build_tool_options_panel	3267	Label widget for cursor edit section label.
cursor_freeze_lineedit	build_tool_options_panel	3268	Stores cursor freeze lineedit.
cursor_info_edit_separator	build_tool_options_panel	3266	Separator widget or layout marker for cursor info edit separator.
cursor_info_label_widgets	build_tool_options_panel	3250	Stores cursor info label widgets.
cursor_info_row_widgets	build_tool_options_panel	3249	Stores cursor info row widgets.
cursor_info_section_label	build_tool_options_panel	3248	Label widget for cursor info section label.
cursor_info_value_labels	build_tool_options_panel	3251	Stores cursor info value labels.
cursor_sample_combo	build_tool_options_panel	3280	Combo box widget for cursor sample combo.
cursor_sample_combo_catalog_signature	invalidate_cursor_sample_combo_cache	807	Stores cursor sample combo catalog signature.
cursor_sample_combo_has_mixed_item	invalidate_cursor_sample_combo_cache	808	Stores cursor sample combo has mixed item.
cursor_sample_row	build_tool_options_panel	3283	Layout row container for cursor sample row.
cursor_tool_hint	build_tool_options_panel	3289	Help text widget or message for cursor tool hint.
cursor_tool_page	build_tool_options_panel	3247	Page widget for cursor tool page.
data_table	initUI	3000	Stores data table.
default_circle_radius	__init__	365	Default value for circle radius.
default_dock_state	__init__	395	Default value for dock state.
default_grid_cell_id_direction	__init__	371	Default value for grid cell ID direction.
default_grid_columns	__init__	367	Number of columns in the active grid definition.
default_grid_horizontal_pitch	__init__	368	Default value for grid horizontal pitch.
default_grid_rotation_degrees	__init__	370	Default value for grid rotation degrees.
default_grid_rows	__init__	366	Number of rows in the active grid definition.
default_grid_vertical_pitch	__init__	369	Default value for grid vertical pitch.
delete_tool_hint	build_tool_options_panel	3295	Help text widget or message for delete tool hint.
delete_tool_page	build_tool_options_panel	3294	Page widget for delete tool page.
deselect_tool_action	initUI	2735	Qt action object for deselect tool action.
displayed_image_edit_crop_applied	initData	1410	Stores displayed image edit crop applied.
dot_size	__init__	325	Size value for dot size.
edit_circle_apply_button	build_tool_options_panel	3530	Button widget for edit circle apply button.
edit_circle_cancel_button	build_tool_options_panel	3532	Button widget for edit circle cancel button.
edit_circle_cell_id_spinbox	build_tool_options_panel	3501	Spin box widget for edit circle cell ID spinbox.
edit_circle_float_button	build_tool_options_panel	3531	Button widget for edit circle float button.
edit_circle_offset_x_spinbox	build_tool_options_panel	3508	Spin box widget for edit circle offset x spinbox.
edit_circle_offset_y_spinbox	build_tool_options_panel	3513	Spin box widget for edit circle offset y spinbox.
edit_circle_radius_spinbox	build_tool_options_panel	3503	Spin box widget for edit circle radius spinbox.
edit_circle_tool_hint	build_tool_options_panel	3527	Help text widget or message for edit circle tool hint.
edit_circle_tool_page	build_tool_options_panel	3500	Page widget for edit circle tool page.
edit_grid_apply_button	build_tool_options_panel	3642	Button widget for edit grid apply button.
edit_grid_cancel_button	build_tool_options_panel	3644	Button widget for edit grid cancel button.
edit_grid_float_button	build_tool_options_panel	3643	Button widget for edit grid float button.
edit_grid_hpitch_spinbox	build_tool_options_panel	3603	Spin box widget for edit grid hpitch spinbox.
edit_grid_offset_x_spinbox	build_tool_options_panel	3618	Spin box widget for edit grid offset x spinbox.
edit_grid_offset_y_spinbox	build_tool_options_panel	3623	Spin box widget for edit grid offset y spinbox.
edit_grid_radius_spinbox	build_tool_options_panel	3598	Spin box widget for edit grid radius spinbox.
edit_grid_rotation_spinbox	build_tool_options_panel	3613	Spin box widget for edit grid rotation spinbox.
edit_grid_tool_hint	build_tool_options_panel	3639	Help text widget or message for edit grid tool hint.
edit_grid_tool_page	build_tool_options_panel	3597	Page widget for edit grid tool page.
edit_grid_vpitch_spinbox	build_tool_options_panel	3608	Spin box widget for edit grid vpitch spinbox.
edit_group_base_horizontal_pitch	__init__	377	Spacing value for edit group base horizontal pitch.
edit_group_base_radii_by_number	__init__	375	Stores edit group base radii by number.
edit_group_base_radius	__init__	374	Radius value for edit group base radius.
edit_group_base_rotation_degrees	__init__	379	Stores edit group base rotation degrees.
edit_group_base_vertical_pitch	__init__	378	Spacing value for edit group base vertical pitch.
edit_group_horizontal_pitch_delta	__init__	380	Stores edit group horizontal pitch delta.
edit_group_radius_delta	__init__	376	Stores edit group radius delta.
edit_group_rotation_delta	__init__	382	Stores edit group rotation delta.
edit_group_vertical_pitch_delta	__init__	381	Stores edit group vertical pitch delta.
edit_session_metadata_action	initUI	2708	Qt action object for edit session metadata action.
edit_single_base_radius	__init__	372	Radius value for edit single base radius.
edit_single_radius_delta	__init__	373	Stores edit single radius delta.
edit_tool_action	initUI	2734	Qt action object for edit tool action.
flag_toggle_button	initUI	2935	Button widget for flag toggle button.
flagframe_list	initData	1344	Ordered list used for flagframe list.
frame_status_label	initUI	3103	Label widget for frame status label.
freeze_count_timeseries_headers	initData	1369	Column header data for freeze count timeseries headers.
freeze_count_timeseries_rows	initData	1370	Row-oriented data for freeze count timeseries rows.
freeze_count_timeseries_summary	initData	1371	Summary metadata for freeze count timeseries summary.
freeze_count_timeseries_table	initUI	3002	Stores freeze count timeseries table.
freeze_dock	initUI	3048	Dock widget reference for freeze dock.
freeze_finder_detect_brightening	__init__	346	Stores freeze finder detect brightening.
freeze_finder_prominence	__init__	342	Stores freeze finder prominence.
freeze_finder_tail_extend_points	__init__	343	Stores freeze finder tail extend points.
freeze_finder_width	__init__	341	Geometry value for freeze finder width.
freeze_results_headers	apply_manual_freeze_event_indices	967	Column header data for freeze results headers.
freeze_results_rows	apply_manual_freeze_event_indices	965	Row-oriented data for freeze results rows.
freeze_table	initUI	3001	Stores freeze table.
grayscale_dock	initUI	3045	Dock widget reference for grayscale dock.
grayscale_plot_dock	initUI	3046	Dock widget reference for grayscale plot dock.
grayscale_plot_widget	initUI	3003	Qt widget reference for grayscale plot widget.
grayscale_results_headers	initData	1365	Column header data for grayscale results headers.
grayscale_results_rows	initData	1366	Row-oriented data for grayscale results rows.
grid_apply_button	build_tool_options_panel	3592	Button widget for grid apply button.
grid_cancel_button	build_tool_options_panel	3594	Button widget for grid cancel button.
grid_cell_id_direction	__init__	337	Stores grid cell ID direction.
grid_columns	__init__	333	Number of columns in the active grid definition.
grid_columns_spinbox	build_tool_options_panel	3541	Spin box widget for grid columns spinbox.
grid_float_button	build_tool_options_panel	3593	Button widget for grid float button.
grid_horizontal_pitch	__init__	334	Spacing value for grid horizontal pitch.
grid_hpitch_spinbox	build_tool_options_panel	3551	Spin box widget for grid hpitch spinbox.
grid_offset_x_spinbox	build_tool_options_panel	3566	Spin box widget for grid offset x spinbox.
grid_offset_y_spinbox	build_tool_options_panel	3571	Spin box widget for grid offset y spinbox.
grid_pitch_wheel_step	__init__	339	Stores grid pitch wheel step.
grid_preview_fill_color	__init__	361	Color setting for grid preview fill color.
grid_preview_floating	initData	1416	Stores grid preview floating.
grid_preview_handle_item	initData	1414	Stores grid preview handle item.
grid_preview_items	initData	1413	Stores grid preview items.
grid_preview_origin_pixels	initData	1415	Stores grid preview origin pixels.
grid_preview_outline_color	__init__	360	Color setting for grid preview outline color.
grid_radius_spinbox	build_tool_options_panel	3546	Spin box widget for grid radius spinbox.
grid_rotation_degrees	__init__	336	Stores grid rotation degrees.
grid_rotation_spinbox	build_tool_options_panel	3561	Spin box widget for grid rotation spinbox.
grid_rows	__init__	332	Number of rows in the active grid definition.
grid_rows_spinbox	build_tool_options_panel	3536	Spin box widget for grid rows spinbox.
grid_tilt_wheel_step	__init__	340	Stores grid tilt wheel step.
grid_tool_action	initUI	2733	Qt action object for grid tool action.
grid_tool_hint	build_tool_options_panel	3589	Help text widget or message for grid tool hint.
grid_tool_page	build_tool_options_panel	3535	Page widget for grid tool page.
grid_vertical_pitch	__init__	335	Spacing value for grid vertical pitch.
grid_vpitch_spinbox	build_tool_options_panel	3556	Spin box widget for grid vpitch spinbox.
history_restoring	__init__	390	Stores history restoring.
imageNames	initData	1350	Stores image names.
imagePaths	initData	1349	Stores image paths.
image_cache	initData	1402	Cache entry or cache container for image cache.
image_cache_size	initData	1403	Cache entry or cache container for image cache size.
image_edit_action	initUI	2719	Qt action object for image edit action.
image_edit_contrast	initData	1331	Stores image edit contrast.
image_edit_contrast_block	build_tool_options_panel	3352	Grouped layout block for image edit contrast block.
image_edit_contrast_header	build_tool_options_panel	3359	Header widget or layout object for image edit contrast header.
image_edit_contrast_label	build_tool_options_panel	3365	Label widget for image edit contrast label.
image_edit_contrast_separator	build_tool_options_panel	3389	Separator widget or layout marker for image edit contrast separator.
image_edit_contrast_slider	build_tool_options_panel	3377	Slider widget for image edit contrast slider.
image_edit_contrast_spinbox	build_tool_options_panel	3369	Spin box widget for image edit contrast spinbox.
image_edit_crop_angle	initData	1341	Angle value for image edit crop angle.
image_edit_crop_apply_button	build_tool_options_panel	3439	Button widget for image edit crop apply button.
image_edit_crop_button_row	build_tool_options_panel	3430	Layout row container for image edit crop button row.
image_edit_crop_center_x	initData	1337	Geometry value for image edit crop center x.
image_edit_crop_center_y	initData	1338	Geometry value for image edit crop center y.
image_edit_crop_height	initData	1340	Geometry value for image edit crop height.
image_edit_crop_overlay	initData	1409	Overlay object used for image edit crop overlay.
image_edit_crop_reset_button	build_tool_options_panel	3444	Button widget for image edit crop reset button.
image_edit_crop_section_label	build_tool_options_panel	3429	Label widget for image edit crop section label.
image_edit_crop_start_button	build_tool_options_panel	3434	Button widget for image edit crop start button.
image_edit_crop_width	initData	1339	Geometry value for image edit crop width.
image_edit_exposure	initData	1330	Stores image edit exposure.
image_edit_exposure_block	build_tool_options_panel	3312	Grouped layout block for image edit exposure block.
image_edit_exposure_header	build_tool_options_panel	3319	Header widget or layout object for image edit exposure header.
image_edit_exposure_label	build_tool_options_panel	3325	Label widget for image edit exposure label.
image_edit_exposure_separator	build_tool_options_panel	3350	Separator widget or layout marker for image edit exposure separator.
image_edit_exposure_slider	build_tool_options_panel	3338	Slider widget for image edit exposure slider.
image_edit_exposure_spinbox	build_tool_options_panel	3329	Spin box widget for image edit exposure spinbox.
image_edit_histogram_scale_cache	initData	1407	Cache entry or cache container for image edit histogram scale cache.
image_edit_histogram_separator	build_tool_options_panel	3310	Separator widget or layout marker for image edit histogram separator.
image_edit_histogram_timer	initUI	2915	Timer object used for image edit histogram timer.
image_edit_histogram_widget	build_tool_options_panel	3307	Qt widget reference for image edit histogram widget.
image_edit_preview_in_progress	initData	1356	Tracks whether image edit preview in progress.
image_edit_preview_timer	initUI	2911	Timer object used for image edit preview timer.
image_edit_tool_hint	build_tool_options_panel	3463	Help text widget or message for image edit tool hint.
image_edit_tool_page	build_tool_options_panel	3300	Page widget for image edit tool page.
image_edit_uniform_exposure_area_button	build_tool_options_panel	3396	Button widget for image edit uniform exposure area button.
image_edit_uniform_exposure_area_height	initData	1335	Geometry value for image edit uniform exposure area height.
image_edit_uniform_exposure_area_width	initData	1334	Geometry value for image edit uniform exposure area width.
image_edit_uniform_exposure_area_x	initData	1332	Geometry value for image edit uniform exposure area x.
image_edit_uniform_exposure_area_y	initData	1333	Geometry value for image edit uniform exposure area y.
image_edit_uniform_exposure_button_row	build_tool_options_panel	3392	Layout row container for image edit uniform exposure button row.
image_edit_uniform_exposure_hint	build_tool_options_panel	3424	Help text widget or message for image edit uniform exposure hint.
image_edit_uniform_exposure_offsets	initData	1336	Offset values for image edit uniform exposure offsets.
image_edit_uniform_exposure_overlay	initData	1408	Overlay object used for image edit uniform exposure overlay.
image_edit_uniform_exposure_reset_button	build_tool_options_panel	3406	Button widget for image edit uniform exposure reset button.
image_edit_uniform_exposure_run_button	build_tool_options_panel	3401	Button widget for image edit uniform exposure run button.
image_edit_uniform_exposure_section_label	build_tool_options_panel	3391	Label widget for image edit uniform exposure section label.
image_edit_uniform_exposure_separator	build_tool_options_panel	3427	Separator widget or layout marker for image edit uniform exposure separator.
image_index	initData	1351	Zero-based index for image index.
image_list_dock	initUI	3040	Dock widget reference for image list dock.
image_list_enabled	__init__	389	Tracks whether image list enabled.
image_list_entry_ids	initData	1420	Stores image list entry ids.
image_list_model	initUI	2985	Stores image list model.
image_list_widget	initUI	2986	Qt widget reference for image list widget.
image_name_label	initUI	3116	Label widget for image name label.
image_preview_timer	initUI	2908	Timer object used for image preview timer.
image_slider	initUI	2900	Slider widget for image slider.
image_textbox	initUI	2924	Stores image textbox.
image_width	initData	1348	Geometry value for image width.
import_csu_is_dat_action	initUI	2715	Qt action object for import csu is dat action.
import_tamu_linkam_xlsx_action	initUI	2716	Qt action object for import tamu linkam xlsx action.
import_temperature_csv_action	initUI	2714	Qt action object for import temperature CSV action.
keyframe_cell_items_dict	initData	1345	Mapping used for keyframe cell items dict.
keyframe_list	initData	1343	Ordered list used for keyframe list.
keyframe_toggle_button	initUI	2934	Button widget for keyframe toggle button.
last_committed_image_index	initData	1352	Most recently used value for committed image index.
last_freeze_output_path	apply_manual_freeze_event_indices	968	Most recently used value for freeze output path.
last_grayscale_output_path	initData	1363	Most recently used value for grayscale output path.
last_standard_temperature_frame_interval_seconds	initData	1381	Most recently used value for standard temperature frame interval seconds.
last_standard_temperature_generated_start_text	initData	1380	Most recently used value for standard temperature generated start text.
last_standard_temperature_image_timestamp_source	initData	1376	Most recently used value for standard temperature image timestamp source.
last_standard_temperature_image_timestamp_style	initData	1377	Most recently used value for standard temperature image timestamp style.
last_standard_temperature_temperature_timestamp_style	initData	1378	Most recently used value for standard temperature temperature timestamp style.
last_standard_temperature_temperature_unit	initData	1382	Most recently used value for standard temperature temperature unit.
last_standard_temperature_use_image_timestamp_style	initData	1379	Most recently used value for standard temperature use image timestamp style.
last_temperature_blank_sample_names	initData	1375	Most recently used value for temperature blank sample names.
last_temperature_calibration_path	initData	1373	Most recently used value for temperature calibration path.
last_temperature_import_path	initData	1372	Most recently used value for temperature import path.
last_temperature_reset_temperature	initData	1374	Most recently used value for temperature reset temperature.
leftButton	initUI	2932	Stores left button.
maximum_zoom	__init__	324	Stores maximum zoom.
new_session_action	initUI	2704	Qt action object for new session action.
next_cell_id	initData	1325	Next value to allocate for cell ID.
next_image_list_entry_id	initData	1421	Next value to allocate for image list entry ID.
next_sample_id	recompute_next_sample_id	614	Next value to allocate for sample ID.
open_session_action	initUI	2705	Qt action object for open session action.
output_results_action	initUI	2713	Qt action object for output results action.
output_state	initData	1399	State bundle for output state.
pan_tool_action	initUI	2736	Qt action object for pan tool action.
pen_width	__init__	323	Geometry value for pen width.
pending_analysis_before_state	initData	1389	Pending value for analysis before state.
pending_analysis_progress_index	initData	1388	Pending value for analysis progress index.
pending_image_edit_histogram_apply_crop	initData	1358	Pending value for image edit histogram apply crop.
pending_image_edit_histogram_qimage	initData	1357	Pending value for image edit histogram qimage.
pending_image_edit_preview_state	initData	1355	Pending value for image edit preview state.
pending_navigation_before_index	initData	1383	Pending value for navigation before index.
pending_navigation_history_text	initData	1384	Pending value for navigation history text.
pending_preview_image_index	initData	1353	Pending value for preview image index.
pixmap_cache	initData	1404	Cache entry or cache container for pixmap cache.
pixmap_cache_size	initData	1405	Cache entry or cache container for pixmap cache size.
pixmap_item	update_display_pixmaps	9435	Stores pixmap item.
placeholder_items	initData	1412	Stores placeholder items.
preferences_action	initUI	2690	Qt action object for preferences action.
preview_cancel_shortcut	initUI	2836	Stores preview cancel shortcut.
preview_confirm_shortcut	initUI	2830	Stores preview confirm shortcut.
preview_confirm_shortcut_enter	initUI	2833	Stores preview confirm shortcut enter.
preview_frame_update_in_progress	initData	1354	Tracks whether preview frame update in progress.
preview_handle_size	__init__	362	Size value for preview handle size.
preview_offset_x	initData	1417	Geometry value for preview offset x.
preview_offset_y	initData	1418	Geometry value for preview offset y.
radius_status_label	initUI	3101	Label widget for radius status label.
radius_textbox	initUI	3105	Stores radius textbox.
radius_wheel_step	__init__	338	Stores radius wheel step.
raw_image_cache	initData	1400	Cache entry or cache container for raw image cache.
raw_image_cache_size	initData	1401	Cache entry or cache container for raw image cache size.
raw_image_size_cache	initData	1406	Cache entry or cache container for raw image size cache.
redo_action	initUI	2725	Qt action object for redo action.
relink_images_action	initUI	2711	Qt action object for relink images action.
remove_selected_action	initUI	2702	Qt action object for remove selected action.
rendered_cell_items	initData	1324	Stores rendered cell items.
reset_cursor_action	initUI	2731	Qt action object for reset cursor action.
restore_window_action	initUI	3073	Qt action object for restore window action.
results_table_tabs	initUI	3007	Stores results table tabs.
results_tables_dock	initUI	3047	Dock widget reference for results tables dock.
rightButton	initUI	2933	Stores right button.
run_analysis_action	initUI	2712	Qt action object for run analysis action.
sample_add_button	build_sample_catalog_panel	3744	Button widget for sample add button.
sample_catalog	ensure_sample_catalog_matches_cell_records	769	Stores sample catalog.
sample_catalog_dock	initUI	3043	Dock widget reference for sample catalog dock.
sample_catalog_tree	build_sample_catalog_panel	3712	Stores sample catalog tree.
sample_catalog_tree_delegate	build_sample_catalog_panel	3734	Stores sample catalog tree delegate.
sample_catalog_tree_syncing	build_sample_catalog_panel	3711	Stores sample catalog tree syncing.
sample_catalog_widget	initUI	3020	Qt widget reference for sample catalog widget.
sample_delete_button	build_sample_catalog_panel	3746	Button widget for sample delete button.
sample_manager_action	initUI	2718	Qt action object for sample manager action.
sample_name_pattern	set_preferences	429	Stores sample name pattern.
save_session_action	initUI	2706	Qt action object for save session action.
save_session_as_action	initUI	2707	Qt action object for save session as action.
scene	initUI	2967	Stores scene.
select_tool_action	initUI	2732	Qt action object for select tool action.
session_active	initData	1425	Tracks whether session active.
session_date	initData	1394	Stores session date.
session_institution	initData	1393	Stores session institution.
session_metadata_status_label	initUI	3097	Label widget for session metadata status label.
session_project_name	initData	1391	Display name for session project name.
session_user_name	initData	1392	Display name for session user name.
session_well_volume_uL	initData	1395	Stores session well volume u l.
slider_buttons_layout	initUI	2955	Stores slider buttons layout.
slider_buttons_widget	initUI	2959	Qt widget reference for slider buttons widget.
slider_drag_start_index	initData	1385	Zero-based index for slider drag start index.
slider_maxzoom_pixel_interval	__init__	326	Stores slider maxzoom pixel interval.
slider_tick_pixel_interval	__init__	327	Stores slider tick pixel interval.
sort_images_action	initUI	2717	Qt action object for sort images action.
sort_mode	__init__	331	Mode value for sort mode.
space_held	__init__	394	Stores space held.
statusBar	initUI	3094	Stores status bar.
syncing_image_list_selection	initData	1422	Stores syncing image list selection.
temperature_cycle_warmup_hysteresis_c	__init__	347	Stores temperature cycle warmup hysteresis c.
temporary_event_data	__init__	393	Stores temporary event data.
terminal	initUI	2981	Stores terminal.
timer	initData	1398	Stores timer.
timeseries_convolution_line_width	__init__	350	Geometry value for timeseries convolution line width.
timeseries_current_frame_color	__init__	353	Color setting for timeseries current frame color.
timeseries_current_frame_line_width	__init__	354	Geometry value for timeseries current frame line width.
timeseries_freeze_line_color	__init__	351	Color setting for timeseries freeze line color.
timeseries_freeze_line_width	__init__	352	Geometry value for timeseries freeze line width.
timeseries_line_width	__init__	349	Geometry value for timeseries line width.
timeseries_palette	__init__	348	Stores timeseries palette.
tool_mode	initData	1424	Mode value for tool mode.
tool_name_dict	initUI	2888	Mapping used for tool name dict.
tool_options_dock	initUI	3042	Dock widget reference for tool options dock.
tool_options_mode_label	build_tool_options_panel	3233	Label widget for tool options mode label.
tool_options_none_label	build_tool_options_panel	3242	Label widget for tool options none label.
tool_options_none_page	build_tool_options_panel	3241	Page widget for tool options none page.
tool_options_stack	build_tool_options_panel	3238	Stores tool options stack.
tool_options_widget	initUI	3019	Qt widget reference for tool options widget.
tool_status_label	initUI	3118	Label widget for tool status label.
toolbar	initUI	2857	Stores toolbar.
undo_action	initUI	2724	Qt action object for undo action.
undo_limit	__init__	328	Stores undo limit.
undo_redo_enabled	__init__	388	Tracks whether undo redo enabled.
undo_stack	__init__	387	Stores undo stack.
view	initUI	2970	Stores view.
view_slider_widget	initUI	2978	Qt widget reference for view slider widget.
viewer_double_action	initUI	2721	Qt action object for viewer double action.
viewer_image_count	__init__	329	Count value for viewer image count.
viewer_orientation_toggle_action	initUI	2723	Qt action object for viewer orientation toggle action.
viewer_single_action	initUI	2720	Qt action object for viewer single action.
viewer_split_orientation	__init__	330	Stores viewer split orientation.
viewer_triple_action	initUI	2722	Qt action object for viewer triple action.
worker	outputData	9735	Stores worker.
zoom_slider	initUI	2943	Slider widget for zoom slider.
zoom_status_label	initUI	3102	Label widget for zoom status label.
zoom_textbox	initUI	3106	Stores zoom textbox.
zoom_window_action	initUI	3071	Qt action object for zoom window action.

Methods

Analysis and results

Method	Line	Explanation
show_analysis_progress_frame(index)	2226	Implements show analysis progress frame.
get_analysis_progress_interval_ms()	2243	Returns analysis progress interval ms.
enqueue_analysis_progress_frame(index)	2246	Implements enqueue analysis progress frame.
flush_pending_analysis_progress()	2259	Implements flush pending analysis progress.
update_results_tables()	4820	Updates results tables.
update_results_table_visibility()	4833	Updates results table visibility.
set_freeze_count_timeseries_results(headers, rows, summary=None)	4852	Sets freeze count timeseries results.
invalidate_freeze_count_timeseries_results(reason=None)	4966	Invalidates freeze count timeseries results.
invalidate_analysis_results(reason=None)	4977	Invalidates analysis results.
refresh_grayscale_plot()	5007	Refreshes grayscale plot.
grayscale_plot_is_visible()	5028	Implements grayscale plot is visible.
update_grayscale_plot_current_frame()	5040	Updates grayscale plot current frame.
get_plot_current_image_index()	5047	Returns plot current image index.
load_grayscale_results(file_path)	6322	Loads grayscale results.
set_freeze_results(headers, rows)	6339	Sets freeze results.
build_standard_freeze_count_timeseries_results(parsed_timeseries, blank_sample_names=None, image_timestamp_source=IMAGE_TIMESTAMP_SOURCE_FILENAME, image_timestamp_style=TIMESTAMP_STYLE_AUTO, generated_start_text='', frame_interval_seconds=None, temperature_timestamp_style=TIMESTAMP_STYLE_AUTO, temperature_unit=TEMPERATURE_UNIT_CELSIUS, reset_temperature=None)	6720	Builds standard freeze count timeseries results.
export_grayscale_results_for_external_tool()	7601	Exports grayscale results for external tool.
export_results_csv(checked=False)	7639	Exports results CSV.
onAnalysisDone(index, results)	9779	Implements on analysis done.

Cells and samples

Method	Line	Explanation
sample_visual_color(sample_id, alpha=255)	538	Returns sample-related visual color.
sample_visual_color_for_cell(cell_id, alpha=255)	548	Returns sample-related visual color for cell.
refresh_cell_sample_visuals()	554	Refreshes cell sample visuals.
extract_cell_id_from_analysis_header(header_text)	560	Implements extract cell ID from analysis header.
extract_cell_id_from_label(label_text)	563	Implements extract cell ID from label.
ensure_cell_record(cell_id)	572	Ensures cell record.
ensure_cell_registry_matches_scene_cells()	575	Ensures cell registry matches scene cells.
recompute_next_cell_id(preserve_if_larger=True)	578	Recomputes next cell ID.
allocate_cell_id()	581	Allocates cell ID.
cell_id_exists(cell_id, exclude_cell_id=None)	584	Implements cell ID exists.
rename_cell_id(old_cell_id, new_cell_id)	587	Renames cell ID.
clear_cell_analysis()	590	Clears cell analysis.
sync_cell_analysis_from_results()	593	Synchronizes cell analysis from results.
prune_analysis_results_for_deleted_cells(deleted_cell_ids)	596	Prunes analysis results for deleted cells.
recompute_next_sample_id(preserve_if_larger=True)	605	Recomputes next sample ID.
allocate_sample_id()	621	Allocates sample ID.
default_sample_name(sample_id)	627	Returns the default sample name.
sample_name_for_id(sample_id)	653	Returns sample-related name for ID.
sample_record_for_id(sample_id)	656	Returns sample-related record for ID.
default_sample_record(sample_id)	665	Returns the default sample record.
build_freeze_count_timeseries_sample_column_metadata(sample)	670	Builds freeze count timeseries sample column metadata.
freeze_count_timeseries_sample_column_metadata()	686	Implements freeze count timeseries sample column metadata.
ensure_sample_catalog_matches_cell_records()	767	Ensures sample catalog matches cell records.
cursor_sample_catalog_signature()	784	Implements cursor sample catalog signature.
ordered_sample_catalog_records()	790	Returns ordered sample catalog records.
available_sample_names()	799	Implements available sample names.
invalidate_cursor_sample_combo_cache()	806	Invalidates cursor sample combo cache.
set_cursor_sample_combo_mixed_item_visible(visible)	810	Sets cursor sample combo mixed item visible.
refresh_cursor_sample_combo_catalog(include_mixed_item=False, force=False)	827	Refreshes cursor sample combo catalog.
parse_freeze_frame_text(text)	918	Parses freeze frame text.
rebuild_freeze_rows_for_cell(cell_id, freeze_event_indices)	924	Implements rebuild freeze rows for cell.
build_cells_panel_records()	975	Builds cells panel records.
refresh_cells_panel(changed_columns=None, preserve_selection=False)	992	Refreshes cells panel.
sync_cells_panel_selection()	1059	Synchronizes cells panel selection.
handle_cells_panel_selection_changed()	1077	Handles cells panel selection changed.
should_refresh_cells_panel_from_redraw()	1090	Returns whether refresh cells panel from redraw.
handle_cells_panel_visibility_changed(visible)	1101	Handles cells panel visibility changed.
apply_cursor_freeze_frames_edit()	1218	Applies cursor freeze frames edit.
apply_edit_circle_cell_id_edit()	1274	Applies edit circle cell ID edit.
build_cells_panel()	3665	Builds cells panel.
build_sample_catalog_panel()	3702	Builds sample catalog panel.
selected_sample_catalog_id()	3764	Returns selected sample catalog ID.
sample_catalog_field_is_relevant(field_name, sample_record)	3779	Returns sample-related catalog field is relevant.
apply_sample_catalog_tree_field_state(child_item, field_name, sample_record)	3787	Applies sample catalog tree field state.
apply_sample_catalog_tree_item_state(top_item, sample_id, sample_record)	3815	Applies sample catalog tree item state.
sample_catalog_top_item_by_id(sample_id)	3835	Returns sample-related catalog top item by ID.
refresh_sample_catalog_tree(select_sample_id=None, preserve_selection=True)	3844	Refreshes sample catalog tree.
update_sample_catalog_buttons()	3908	Updates sample catalog buttons.
add_sample_catalog_entry()	3913	Implements add sample catalog entry.
delete_selected_sample_catalog_entry()	3923	Implements delete selected sample catalog entry.
handle_sample_catalog_item_changed(item, column)	3956	Handles sample catalog item changed.
update_cursor_sample_controls()	4019	Updates cursor sample controls.
update_cursor_sample_assignment_state()	4056	Updates cursor sample assignment state.
assign_selected_cells_to_current_sample()	4062	Implements assign selected cells to current sample.
create_sample_from_cursor_controls()	4095	Creates sample from cursor controls.
get_selected_cell_items()	4563	Returns selected cell items.
delete_selected_cells()	4566	Implements delete selected cells.
infer_grid_parameters_from_cells(selected_items)	4600	Infers grid parameters from cells.
handle_scene_cell_selection_changed()	4603	Handles scene cell selection changed.
reselect_cell_ids(cell_ids, sync_tool_panel=True)	4610	Implements reselect cell ids.
show_sample_catalog_manager()	4637	Implements show sample catalog manager.
relabel_freeze_count_timeseries_header_sample_name(header_text, sample_name)	4866	Implements relabel freeze count timeseries header sample name.
refresh_freeze_count_timeseries_metadata_from_sample_catalog(*, relabel_headers=False)	4877	Refreshes freeze count timeseries metadata from sample catalog.
get_plot_target_cell_ids()	4996	Returns plot target cell ids.
push_cell_history(text, before_state, include_analysis=False)	6012	Implements push cell history.
build_freeze_count_timeseries_sample_groups(grouping_mode='samples')	6349	Builds freeze count timeseries sample groups.
edit_current_keyframe_cell_item()	7802	Implements edit current keyframe cell item.
add_cell_item_to_keyframes(added_items=None)	7817	Implements add cell item to keyframes.
delete_cell_item_to_keyframes(cell_id)	7845	Implements delete cell item to keyframes.
delete_cell_items_to_keyframes(cell_ids)	7848	Implements delete cell items to keyframes.
activate_edit_cell_item(cell_item)	8212	Implements activate edit cell item.
anchor_cell_items_to_current_image(cell_items)	9487	Implements anchor cell items to current image.
update_cell_items_selectable_state()	10050	Updates cell items selectable state.
unselect_all_cell_items()	10053	Implements unselect all cell items.
reset_cell_items_edit_chosen()	10056	Resets cell items edit chosen.

General

Method	Line	Explanation
__init__()	319	Initializes the instance.
set_preferences(preserve_session_tool_state=False)	400	Sets preferences.
get_qcolor(color_value)	529	Returns qcolor.
build_freeze_count_timeseries_missing_metadata_report()	692	Builds freeze count timeseries missing metadata report.
show_freeze_count_timeseries_export_notice(exported_paths)	745	Implements show freeze count timeseries export notice.
summarize_integer_list(values, limit=8)	846	Summarizes integer list.
format_integer_list_csv(values)	877	Formats integer list CSV.
parse_integer_csv_text(text, *, allow_empty=True, minimum=None, maximum=None)	893	Parses integer CSV text.
apply_manual_freeze_event_indices(cell_id, freeze_event_indices, refresh_tables=True)	942	Applies manual freeze event indices.
current_single_edit_target_item()	1265	Returns the current single edit target item.
initData()	1316	Implements init data.
image_pixel_to_scene_coordinates(pixel_x, pixel_y, image_rect=None, *, index=None, apply_crop=None)	1771	Implements image pixel to scene coordinates.
scene_to_image_pixel_coordinates(scene_pos, image_rect=None, *, index=None, apply_crop=None)	1790	Implements scene to image pixel coordinates.
format_numeric_value(value)	3168	Formats numeric value.
current_circle_controls()	4193	Returns the current circle controls.
current_grid_controls()	4214	Returns the current grid controls.
handle_circle_radius_spinbox_changed(value)	4360	Handles circle radius spinbox changed.
handle_grid_radius_change(value)	4375	Handles grid radius change.
handle_grid_parameter_change(*_args)	4409	Handles grid parameter change.
clear_grid_preview()	4432	Clears grid preview.
cancel_grid_preview()	4437	Cancels grid preview.
float_grid_preview()	4440	Implements float grid preview.
update_grid_preview()	4449	Updates grid preview.
update_grid_apply_state()	4452	Updates grid apply state.
handle_grid_apply_action()	4455	Handles grid apply action.
handle_circle_apply_action()	4458	Handles circle apply action.
focus_is_text_entry_widget()	4461	Implements focus is text entry widget.
focus_widget_is_within(focus_widget, roots)	4503	Implements focus widget is within.
confirm_active_preview()	4525	Implements confirm active preview.
handle_circle_float_action()	4541	Handles circle float action.
handle_circle_cancel_action()	4545	Handles circle cancel action.
handle_grid_float_action()	4556	Handles grid float action.
handle_grid_cancel_action()	4560	Handles grid cancel action.
get_edit_target_items()	4597	Returns edit target items.
apply_grid_preview()	4634	Applies grid preview.
zoom_window()	4643	Implements zoom window.
eventFilter(watched, event)	4729	Implements event filter.
setup_table_widget(table_widget)	4784	Implements setup table widget.
set_table_data(table_widget, headers, rows)	4793	Sets table data.
update_freeze_count_timeseries_table()	4828	Updates freeze count timeseries table.
cancel_transient_history_state()	5248	Clear unfinished interaction state before undo/redo.
push_snapshot_history(text, before_state)	6003	Implements push snapshot history.
push_data_history(text, before_state)	6048	Implements push data history.
push_navigation_history(text, before_index, after_index)	6066	Implements push navigation history.
format_image_list_entry(index)	6077	Formats image list entry.
populate_image_list()	6088	Implements populate image list.
update_image_list_annotations(rows=None)	6096	Updates image list annotations.
sync_image_list_selection()	6110	Synchronizes image list selection.
handle_image_list_selection(index)	6153	Handles image list selection.
handle_image_list_current_changed(current, previous)	6167	Handles image list current changed.
update_document_interface_state()	6216	Updates document interface state.
get_selected_image_rows()	6265	Returns selected image rows.
navigate_to_image(index, history_text='Change Frame')	6275	Implements navigate to image.
build_freeze_count_timeseries_image_counts(sample_groups, count_mode='cumulative')	6406	Builds freeze count timeseries image counts.
build_freeze_count_timeseries_blank_selection(sample_groups, blank_sample_names=None)	6472	Builds freeze count timeseries blank selection.
build_standard_image_timing_context(parsed_timeseries, image_timestamp_source=IMAGE_TIMESTAMP_SOURCE_FILENAME, image_timestamp_style=TIMESTAMP_STYLE_AUTO, generated_start_text='', frame_interval_seconds=None, reset_temperature=None)	6651	Builds standard image timing context.
write_csv_table(file_path, headers, rows)	7621	Writes CSV table.
write_freeze_count_timeseries_csv(file_path)	7628	Writes freeze count timeseries CSV.
update_flaggedframe_list(is_flagging)	7796	Updates flaggedframe list.
grid_horizontal_pitch_shortcut_label()	7944	Implements grid horizontal pitch shortcut label.
grid_vertical_pitch_shortcut_label()	7947	Implements grid vertical pitch shortcut label.
grid_tilt_shortcut_label()	7950	Implements grid tilt shortcut label.
is_caps_lock_pressed()	7953	Returns whether caps lock pressed.
is_grid_horizontal_pitch_modifier_active(modifiers)	7961	Returns whether grid horizontal pitch modifier active.
is_grid_tilt_modifier_active(modifiers)	7966	Returns whether grid tilt modifier active.
showAboutDialog()	7972	Implements show about dialog.
showPreferencesDialog()	7976	Implements show preferences dialog.
log(message)	7988	Implements log.
show_detailed_error_dialog(title, summary_text, err, detail_text='')	7992	Implements show detailed error dialog.
show_detailed_information_dialog(title, summary_text, detail_text='')	8004	Implements show detailed information dialog.
file_dialog_options()	8016	Implements file dialog options.
reset_transient_interaction_state()	8036	Hard-clear unfinished preview/edit state without changing the active tool.
cancel_edit_state()	8055	Cancel any active or remembered edit workflow before switching tools.
preserve_edit_state_for_pan()	8088	Remember the current edit workflow so pan can return to it.
is_pan_interaction_active()	8181	Returns whether pan interaction active.
enter_temporary_pan_mode()	8187	Enters temporary pan mode.
get_image_paths_from_folder(input_dirpath)	8263	Returns image paths from folder.
natural_sort_key(file_path)	8279	Implements natural sort key.
get_exif_sort_value(file_path)	8285	Returns exif sort value.
is_sort_mode_available(mode, file_paths=None)	8296	Returns whether sort mode available.
get_sort_availability(file_paths=None)	8316	Returns sort availability.
sort_image_paths(file_paths, mode=None)	8326	Implements sort image paths.
openSortImagesDialog()	8343	Implements open sort images dialog.
open_add_images_dialog()	8401	Implements open add images dialog.
loadFolder()	8416	Implements load folder.
loadImages()	8426	Implements load images.
relink_images_folder(checked=False)	8488	Implements relink images folder.
load_aux(input_imagePath)	8744	Loads aux.
remove_selected_image()	8820	Removes selected image.
remove_selected_list_images()	8829	Removes selected list images.
reset_pending_frame_navigation_state(stop_timer=False)	9035	Resets pending frame navigation state.
finalize_frame_update(index)	9172	Implements finalize frame update.
handle_frame_navigation_shortcut(key)	9283	Handles frame navigation shortcut.
resize_image_textbox()	9307	Implements resize image textbox.
updateRadiusTextbox()	9490	Implements update radius textbox.
updateCircleRadius_from_textedit()	9504	Implements update circle radius from textedit.
updateZoomTextbox()	9516	Implements update zoom textbox.
updateZoomLevel()	9520	Implements update zoom level.
updateButtonStates()	9529	Implements update button states.
undo()	9573	Implements undo.
redo()	9586	Implements redo.
keyPressEvent(event)	9599	Qt key-press event handler.
keyReleaseEvent(event)	9680	Qt key-release event handler.
outputData()	9723	Implements output data.
out_put_interpolation()	9772	Implements out put interpolation.
onThreadFinished()	9785	Implements on thread finished.
key_press_button_highlight(button)	9853	Implements key press button highlight.
reset_button_stylesheet(theme=None)	9933	Resets button stylesheet.
update_toggle_flagging_button_icon(theme=None)	10027	Updates toggle flagging button icon.
reset_button_icon(theme=None)	10040	Resets button icon.
switch_light_dark_mode(theme=None)	10060	Implements switch light dark mode.
resizeEvent(event)	10068	Qt resize event handler for this widget.
closeEvent(event)	10073	Implements close event.
load_preferences_from_xml()	10076	Loads preferences from xml.

Image display and cache

Method	Line	Explanation
format_numeric_display(value, decimals=1)	862	Formats numeric display.
get_raw_image_dimensions(index)	1719	Returns raw image dimensions.
get_current_raw_image_dimensions()	1741	Returns current raw image dimensions.
clear_image_caches()	9044	Clears image caches.
get_cached_raw_image(image_path)	9051	Returns cached raw image.
updateImage(index, preview=False)	9222	Implements update image.
updateImageFromTextbox()	9298	Implements update image from textbox.
get_cached_image(index, *, apply_crop=None)	9321	Returns cached image.
get_cached_pixmap(index, *, apply_crop=None)	9348	Returns cached pixmap.
get_display_slots(current_index)	9367	Returns display slots.
clear_context_pixmaps()	9386	Clears context pixmaps.
update_display_pixmaps(current_index, *, apply_crop=None)	9394	Updates display pixmaps.
displayMarkedRegions()	9472	Implements display marked regions.
interpolate_and_displayMarkedRegions(index, preview=False)	9477	Implements interpolate and display marked regions.

Image edit

Method	Line	Explanation
apply_image_edit_state(state, *, invalidate_results=False, refresh_display=True, sync_controls=True)	1465	Applies image edit state.
refresh_current_image_edit_visuals()	1576	Refreshes current image edit visuals.
prewarm_current_image_edit_render_cache()	1597	Implements prewarm current image edit render cache.
get_image_edit_histogram_interval_ms()	1607	Returns image edit histogram interval ms.
request_image_edit_histogram_refresh(q_image=None, *, immediate=False, apply_crop=None)	1610	Implements request image edit histogram refresh.
flush_pending_image_edit_histogram()	1624	Implements flush pending image edit histogram.
normalize_image_edit_uniform_exposure_area_state(area_state=None, *, raw_width=None, raw_height=None)	1631	Normalizes image edit uniform exposure area state.
current_image_edit_uniform_exposure_area_state(*, index=None)	1636	Returns the current image edit uniform exposure area state.
current_image_edit_uniform_exposure_state()	1654	Returns the current image edit uniform exposure state.
compose_image_edit_state(*, exposure=None, contrast=None, uniform_exposure=None, crop=None)	1665	Implements compose image edit state.
has_image_edit_uniform_exposure_area()	1673	Returns whether image edit uniform exposure area.
has_image_edit_uniform_exposure()	1684	Returns whether image edit uniform exposure.
get_image_edit_uniform_exposure_offset(*, index=None, image_path=None)	1687	Returns image edit uniform exposure offset.
current_image_edit_total_exposure(*, index=None, image_path=None)	1700	Returns the current image edit total exposure.
current_image_edit_crop_state(*, index=None)	1706	Returns the current image edit crop state.
normalize_image_edit_crop_state(crop_state=None, *, raw_width=None, raw_height=None)	1746	Normalizes image edit crop state.
should_apply_crop_in_display()	1751	Returns whether apply crop in display.
current_image_edit_crop_transform(index=None, *, apply_crop=None)	1754	Returns the current image edit crop transform.
sync_image_edit_controls()	1806	Synchronizes image edit controls.
refresh_image_edit_histogram(q_image=None, *, apply_crop=None)	1842	Refreshes image edit histogram.
begin_image_edit_history(text)	1910	Begins image edit history.
commit_image_edit_history(text=None)	1918	Commits image edit history.
log_image_edit_change(history_text)	1929	Implements log image edit change.
get_image_edit_preview_interval_ms()	1954	Returns image edit preview interval ms.
reset_pending_image_edit_preview_state(stop_timer=False)	1957	Resets pending image edit preview state.
compose_pending_image_edit_preview_state(*, exposure=None, contrast=None)	1963	Implements compose pending image edit preview state.
queue_image_edit_preview_state(state)	1975	Implements queue image edit preview state.
flush_pending_image_edit_preview()	1981	Implements flush pending image edit preview.
handle_image_edit_exposure_slider_changed(slider_value)	2000	Handles image edit exposure slider changed.
handle_image_edit_exposure_spinbox_changed(exposure_value)	2019	Handles image edit exposure spinbox changed.
handle_image_edit_exposure_slider_released()	2032	Handles image edit exposure slider released.
handle_image_edit_contrast_slider_changed(contrast_value)	2044	Handles image edit contrast slider changed.
handle_image_edit_contrast_spinbox_changed(contrast_value)	2063	Handles image edit contrast spinbox changed.
handle_image_edit_contrast_slider_released()	2076	Handles image edit contrast slider released.
is_image_edit_uniform_exposure_area_active()	2088	Returns whether image edit uniform exposure area active.
begin_image_edit_uniform_exposure_area()	2091	Begins image edit uniform exposure area.
end_image_edit_uniform_exposure_area()	2112	Ends image edit uniform exposure area.
handle_image_edit_uniform_exposure_area_button()	2121	Handles image edit uniform exposure area button.
handle_image_edit_uniform_exposure_overlay_changed(area_state, finalize=False)	2127	Handles image edit uniform exposure overlay changed.
ensure_image_edit_uniform_exposure_overlay()	2158	Ensures image edit uniform exposure overlay.
sync_image_edit_uniform_exposure_overlay()	2169	Synchronizes image edit uniform exposure overlay.
show_image_edit_progress_frame(index)	2208	Implements show image edit progress frame.
compute_image_edit_uniform_exposure_solution(area_state, reference_index, progress_callback=None)	2268	Computes image edit uniform exposure solution.
run_image_edit_uniform_exposure()	2328	Implements run image edit uniform exposure.
reset_image_edit_uniform_exposure()	2366	Resets image edit uniform exposure.
is_image_edit_crop_active()	2385	Returns whether image edit crop active.
get_image_edit_crop_draft_state()	2388	Returns image edit crop draft state.
discard_image_edit_crop_draft()	2394	Implements discard image edit crop draft.
reset_image_edit_crop()	2398	Resets image edit crop.
begin_image_edit_crop()	2426	Begins image edit crop.
handle_image_edit_crop_primary_button()	2456	Handles image edit crop primary button.
apply_image_edit_crop()	2462	Applies image edit crop.
trigger_image_edit_crop_apply_button()	2483	Implements trigger image edit crop apply button.
cancel_image_edit_crop()	2491	Cancels image edit crop.
handle_image_edit_crop_overlay_changed(crop_state, finalize=False)	2503	Handles image edit crop overlay changed.
ensure_image_edit_crop_overlay()	2512	Ensures image edit crop overlay.
sync_image_edit_crop_overlay()	2523	Synchronizes image edit crop overlay.
reset_image_edit_slider_to_default(slider)	4704	Resets image edit slider to default.
push_image_edit_history(text, before_state)	6057	Implements push image edit history.
apply_image_edit_tool_ui()	8110	Applies image edit tool UI.

Session and state

Method	Line	Explanation
serialize_cell_records()	566	Serializes cell records.
deserialize_cell_records(payload)	569	Deserializes cell records.
serialize_sample_catalog()	599	Serializes sample catalog.
deserialize_sample_catalog(payload)	602	Deserializes sample catalog.
restore_add_defaults(include_grid=False)	1307	Restores add defaults.
serialize_session_metadata()	1429	Serializes session metadata.
serialize_image_edit_state()	1438	Serializes image edit state.
apply_session_metadata(metadata)	2542	Applies session metadata.
format_session_metadata_status_text()	2551	Formats session metadata status text.
update_session_metadata_status_label()	2567	Updates session metadata status label.
has_session_content()	2576	Returns whether session content.
has_session_save_payload()	2603	Returns whether session save payload.
prompt_save_before_replacing_session(next_action_label='starting a new session')	2606	Implements prompt save before replacing session.
prompt_new_session_metadata(*, window_title='New Session')	2628	Implements prompt new session metadata.
editSessionMetadata(checked=False)	2638	Implements edit session metadata.
newSession(checked=False)	2647	Implements new session.
restore_window()	4647	Restores window.
capture_session_state()	5054	Captures session state.
capture_cell_state(include_analysis=False)	5093	Captures cell state.
capture_data_state()	5131	Captures data state.
capture_image_edit_history_state()	5161	Captures image edit history state.
capture_image_session_state()	5167	Captures image session state.
capture_timeline_marker_state()	5204	Captures timeline marker state.
capture_loaded_images_state()	5213	Captures loaded images state.
get_active_tool_for_restore()	5235	Return the user-facing tool to preserve across undo/redo.
restore_tool_mode_ui(restored_tool_mode=None)	5269	Reapply cursor/drag/action state after undo/redo restores data.
restore_image_session_state(state, preserve_active_tool=False)	5303	Restores image session state.
restore_loaded_images_state(state, preserve_active_tool=False)	5436	Restores loaded images state.
restore_session_state(state, preserve_active_tool=False)	5553	Restores session state.
restore_cell_state(state, preserve_active_tool=False)	5695	Restores cell state.
restore_timeline_marker_state(state, preserve_active_tool=False)	5847	Restores timeline marker state.
restore_data_state(state, preserve_active_tool=False)	5906	Restores data state.
restore_image_edit_history_state(state, preserve_active_tool=False)	5960	Restores image edit history state.
restore_navigation_index(index, preserve_active_tool=False)	5978	Restores navigation index.
push_image_session_history(text, before_state)	6030	Implements push image session history.
push_loaded_images_history(text, before_state)	6039	Implements push loaded images history.
update_session_actions_state()	6174	Updates session actions state.
restore_after_edit_mode()	8029	Restore controls that are temporarily disabled during single-edit.
resort_current_session()	8362	Implements resort current session.
openSession()	8437	Implements open session.
get_missing_session_image_paths()	8478	Returns missing session image paths.
handle_save_session_action()	8680	Handles save session action.
persist_session_to_path(file_path, *, show_errors=True)	8684	Implements persist session to path.
persist_session_to_current_file(*, show_errors=True)	8706	Implements persist session to current file.
saveSession()	8712	Implements save session.
saveSessionAs()	8723	Implements save session as.
remove_images_from_session(rows)	8848	Removes images from session.
clear_loaded_images(checked=False, confirm=True, log_message='Cleared all loaded images from this session')	8915	Clears loaded images.
clear_session(checked=False, confirm=True, log_message='Cleared session', record_history=True, new_metadata=None, activate_session=False)	8977	Clears session.

Temperature import

Method	Line	Explanation
build_tamu_freeze_count_timeseries_sample_groups()	6463	Builds tamu freeze count timeseries sample groups.
normalize_temperature_reset_threshold(reset_temperature)	6513	Normalizes temperature reset threshold.
detect_cycle_start_indexes_from_temperatures(temperatures, reset_temperature)	6516	Detects cycle start indexes from temperatures.
build_cycle_ids_from_start_indexes(total_count, cycle_start_indexes)	6523	Builds cycle ids from start indexes.
cycle_index_for_position(position_value, cycle_start_positions)	6526	Implements cycle index for position.
build_tamu_image_timing_context(parsed_timeseries, reset_temperature=None)	6532	Builds tamu image timing context.
build_tamu_cycle_reset_image_counts(sample_groups, image_cycle_ids)	6571	Builds tamu cycle reset image counts.
reconcile_counts_by_cycle(raw_counts, anchor_counts, maximum_count, cycle_ids)	6608	Implements reconcile counts by cycle.
corrected_temperature_for_cell(measured_temperature, cell_id, calibration_by_well)	6616	Implements corrected temperature for cell.
corrected_temperature_for_group(measured_temperature, group, calibration_by_well)	6635	Implements corrected temperature for group.
build_csu_freeze_count_timeseries_results(parsed_data, blank_sample_names=None, reset_temperature=None)	6885	Builds csu freeze count timeseries results.
build_tamu_freeze_count_timeseries_results(parsed_timeseries, calibration_by_well=None, blank_sample_names=None, reset_temperature=None)	7077	Builds tamu freeze count timeseries results.
import_standard_temperature_csv(checked=False)	7215	Imports standard temperature CSV.
import_csu_is_dat(checked=False)	7378	Imports csu is dat.
import_tamu_linkam_xlsx(checked=False)	7478	Imports tamu linkam xlsx.

Timeline

Method	Line	Explanation
get_slider_handle_rect(slider)	4691	Returns slider handle rect.
push_timeline_marker_history(text, before_state)	6021	Implements push timeline marker history.
commit_slider_release_navigation()	6308	Commits slider release navigation.
update_keyframe_list(is_adding)	7779	Updates keyframe list.
keyframe_interpolation(frame_number)	7866	Implements keyframe interpolation.
zoom_slider_set_maximum()	7980	Implements zoom slider set maximum.
handle_preview_image_slider_value(index)	9072	Handles preview image slider value.
handle_image_slider_pressed()	9088	Handles image slider pressed.
handle_image_slider_released()	9099	Handles image slider released.
handle_committed_image_slider_value(index)	9149	Handles committed image slider value.
ensure_slider_window_contains_index(index)	9190	Ensures slider window contains index.
decreaseSliderValue()	9263	Implements decrease slider value.
increaseSliderValue()	9273	Implements increase slider value.
sync_zoom_slider_row_geometry()	9875	Synchronizes zoom slider row geometry.
reset_slider_stylesheet(theme=None)	9907	Resets slider stylesheet.
update_toggle_keyframe_button_icon(theme=None)	10014	Updates toggle keyframe button icon.

UI shell

Method	Line	Explanation
set_cursor_display_field_locked(field, locked)	870	Sets cursor display field locked.
refresh_cursor_selection_info(selected_items=None)	1107	Refreshes cursor selection info.
update_cursor_record_edit_state(selected_items=None)	1184	Updates cursor record edit state.
initUI()	2667	Implements init UI.
finalize_initial_dock_layout()	3159	Implements finalize initial dock layout.
enforce_initial_right_dock_tab()	3162	Implements enforce initial right dock tab.
current_preview_absolute_coordinates()	3171	Returns the current preview absolute coordinates.
clamp_preview_absolute_coordinates(x_value, y_value)	3183	Implements clamp preview absolute coordinates.
set_preview_absolute_coordinates(x_value, y_value)	3203	Sets preview absolute coordinates.
build_tool_options_panel()	3224	Builds tool options panel.
sync_tool_options_panel()	4119	Synchronizes tool options panel.
update_preview_shortcut_enabled_state()	4179	Updates preview shortcut enabled state.
sync_circle_tool_panel(radius, is_edit=False)	4245	Synchronizes circle tool panel.
sync_grid_tool_panel(is_edit=False)	4284	Synchronizes grid tool panel.
sync_active_preview_coordinate_controls()	4345	Synchronizes active preview coordinate controls.
handle_preview_offset_change(*_args)	4386	Handles preview offset change.
update_grid_preview_from_scene_pos(scene_pos, pin=False)	4443	Updates grid preview from scene pos.
get_grid_preview_definitions()	4446	Returns grid preview definitions.
focus_is_tool_options_editor()	4478	Implements focus is tool options editor.
focus_allows_preview_shortcut()	4514	Implements focus allows preview shortcut.
handle_preview_confirm_shortcut()	4536	Handles preview confirm shortcut.
handle_preview_cancel_shortcut()	4548	Handles preview cancel shortcut.
create_dock_widget(title, widget, object_name)	4651	Creates dock widget.
show_dock_widget(dock_widget)	4673	Implements show dock widget.
store_default_dock_state()	4682	Implements store default dock state.
reset_panel_layout()	4685	Resets panel layout.
set_active_image_panel(panel_name)	6262	Sets active image panel.
set_tools_highlight(tool_mode)	8019	Sets tools highlight.
cancel_unfinished_tool_workflow()	8070	Drop any transient add/edit/grid interaction before a real tool switch.
set_view_cursor_shape(cursor_shape)	8093	Sets view cursor shape.
apply_cursor_tool_ui()	8099	Applies cursor tool UI.
finalize_tool_mode_after_commit()	8122	Clear transient override state without changing the active tool.
apply_select_tool_ui(preserve_preview=False)	8128	Applies select tool UI.
apply_grid_tool_ui(preserve_preview=False)	8140	Applies grid tool UI.
apply_deselect_tool_ui()	8155	Applies deselect tool UI.
reset_cursor_tool(checked)	8166	Resets cursor tool.
panTool(checked)	8171	Implements pan tool.
imageEditTool(checked)	8195	Implements image edit tool.
selectTool(checked)	8200	Implements select tool.
gridTool(checked)	8206	Implements grid tool.
editTool(checked)	8240	Implements edit tool.
deselectTool(checked)	8255	Implements deselect tool.
remove_current_viewer_image()	8843	Removes current viewer image.
get_preview_frame_interval_ms()	9122	Returns preview frame interval ms.
flush_pending_preview_image()	9125	Implements flush pending preview image.
is_viewer_split_vertical()	9383	Returns whether viewer split vertical.
set_undo_status()	9551	Sets undo status.
set_redo_status()	9562	Sets redo status.
key_press_toolbutton_highlight(an_action)	9840	Implements key press toolbutton highlight.
reset_toolbar_stylesheet(theme=None)	9866	Resets toolbar stylesheet.
reset_status_bar_stylesheet(theme=None)	9921	Resets status bar stylesheet.
toolbar_icon(mode_folder, icon_name)	9945	Implements toolbar icon.
reset_toolbar_icon(theme=None)	9948	Resets toolbar icon.
update_viewer_mode_actions()	9975	Updates viewer mode actions.
update_viewer_orientation_toggle_action(mode_folder=None)	9981	Updates viewer orientation toggle action.
set_viewer_image_count(count)	9999	Sets viewer image count.
toggle_viewer_split_orientation()	10006	Toggles viewer split orientation.