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find a way to get the metadata that ports over to xenium explorer, alphabetized!

Status: Open.

#29 In RaredonLab/NICHESv2;

· diegospa99 opened on Nov 12, 2025

migrate the plot insets function diego made in his pplr config file to NICHESv2

Status: Open.

#28 In RaredonLab/NICHESv2;

· diegospa99 opened on Nov 11, 2025

consider ways to package edge and node data?

Status: Open.

#27 In RaredonLab/NICHESv2;

· diegospa99 opened on Nov 11, 2025

consider whether NICHESv2 should depend on seurat at all...

Status: Open.

#26 In RaredonLab/NICHESv2;

· diegospa99 opened on Nov 11, 2025

consider how best to store index and handle niches data

Status: Open.

#25 In RaredonLab/NICHESv2;

· diegospa99 opened on Nov 11, 2025

integrate the mindmaps as part of the edge coloring

Status: Open.

#24 In RaredonLab/NICHESv2;

· diegospa99 opened on Nov 11, 2025

make some functions to make C2C data heatmaps

Status: Open.

#23 In RaredonLab/NICHESv2;

· diegospa99 opened on Nov 11, 2025

build some fundamental plotting functions tuned for NICHES data

Status: Open.

#22 In RaredonLab/NICHESv2;

· diegospa99 opened on Nov 11, 2025

make C2S / S2C non dependent on C2C

Status: Open.

#21 In RaredonLab/NICHESv2;

· diegospa99 opened on Nov 11, 2025

make nonspatial C2C more flexible / user customizable

Status: Open.

#20 In RaredonLab/NICHESv2;

· diegospa99 opened on Nov 11, 2025

make N2C2N part of niches, with good underlying logic

Status: Open.

#19 In RaredonLab/NICHESv2;

· diegospa99 opened on Nov 11, 2025

make C2C as a dedicated step that always runs

Status: Open.

#18 In RaredonLab/NICHESv2;

· diegospa99 opened on Nov 11, 2025