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Make some of the imports optional

Status: Open.

#112 In AMRverse/AMRgen;

· evolarjun opened on May 28, 2026

add function to fetch genotype data from Allthebacteria

Status: Open.

#110 In AMRverse/AMRgen;

· katholt opened on May 13, 2026

Add minor errors to concordance function

Status: Open.

#109 In AMRverse/AMRgen;

· katholt opened on May 13, 2026

Add drug as a parameter in the summarise_geno_pheno() function

Status: Open.

#95 In AMRverse/AMRgen;

· natacha-couto opened on Mar 19, 2026

amr_upset() - MIC distribution panel - box plot middle line is not plotting the median?

Status: Open.

#93 In AMRverse/AMRgen;

· karatsang opened on Mar 19, 2026

check_binary_matrix fails if no 'mic' column

Status: Open.

#92 In AMRverse/AMRgen;

· katholt opened on Mar 18, 2026

concordance() - nice to have : exclude_markers filter by list of core genes

Status: Open.

#60 In AMRverse/AMRgen;

· silargi opened on Feb 18, 2026

add function to download Allthebacteria AMRfp data

Status: Open.

#46 In AMRverse/AMRgen;

· katholt opened on Feb 10, 2026

download_ebi() function: Warnings in mutate()

Status: Open.

#43 In AMRverse/AMRgen;

· silargi opened on Feb 6, 2026

Sulfonamide to it's own "drug_class"?

Status: Open.

#35 In AMRverse/AMRgen;

· evolarjun opened on Jan 5, 2026

Generalise upset plot function to accept any genotype and quantitative phenotype

Status: Open.

#33 In AMRverse/AMRgen;

· MaxWallat opened on May 20, 2025

Tree vs geno & pheno

Status: Open.

#32 In AMRverse/AMRgen;

· meganecarey opened on May 20, 2025