Skip to content

fix: CheckM2 error - #17

Open
webbrain-one wants to merge 1 commit into
zoubohao:mainfrom
webbrain-one:webbrain/issue-14
Open

fix: CheckM2 error#17
webbrain-one wants to merge 1 commit into
zoubohao:mainfrom
webbrain-one:webbrain/issue-14

Conversation

@webbrain-one

Copy link
Copy Markdown

Closes #14

Patch generated by poolside/laguna-xs-2.1:free via OpenRouter.

… prediction

The error `TypeError: 'coo_matrix' object is not subscriptable` in
`checkm2/modelPostprocessing.py` is caused by a breaking change in
scipy >= 1.14 where `coo_matrix.__iter__` no longer yields rows. Pin
scipy<1.14 in the conda environment to restore compatibility with
CheckM2 1.0.2's ML post-processing step.

Patch generated by poolside/laguna-xs-2.1:free via OpenRouter.
@webbrain-one webbrain-one mentioned this pull request Aug 5, 2026
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

CheckM2 error

1 participant