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1. broadinstitute/qprimer_designer broadinstitute/qprimer_designer Public

   Design tool for highly performant qPCR diagnostics.

   Python 7 1

2. covid-pregnancy-immune-profiling covid-pregnancy-immune-profiling Public

   [Analysis] Immune mediator profiling in maternal and cord blood from pregnancies affected by COVID-19, with comparisons across infection status and disease severity.

   R

3. immunoPlex immunoPlex Public

   [R package] Statistical analysis of multiplex immunoassay data, supporting limit-of-detection censoring, mixed-effects regression, dimensionality reduction, and clustering.

   R 1

4. ILC_trained_immunity ILC_trained_immunity Public

   [scRNA-seq Analysis] Trained ILCs confer adaptive immunity-independent protection against influenza

   Jupyter Notebook

5. CITEseq-nf CITEseq-nf Public

   [Nextflow Pipeline] A workflow for CITE-seq preprocessing and embedding, covering ambient-RNA decontamination, QC, ADT/RNA normalization, marker-threshold gating, and joint totalVI + scVI integrati…

   Python

6. Presentations Presentations Public

   Seminar talks and training presentations on Prompt Engineering and Agentic AI since 2024