GitHub - youngnd/Shaem_review: Scripts for S. haematobium v3 manuscript · GitHub

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
01_gap_close_polish.sh		01_gap_close_polish.sh
02_repeat_masking.sh		02_repeat_masking.sh
03_synteny.sh		03_synteny.sh
04_short_RNA_QC.sh		04_short_RNA_QC.sh
05_gene_prediction.sh		05_gene_prediction.sh
06_functional_annotation.sh		06_functional_annotation.sh
07a_SNP_UpSet.R		07a_SNP_UpSet.R
07b_select_high_dens_SNPs.R		07b_select_high_dens_SNPs.R
07c_circos_SNPs.sh		07c_circos_SNPs.sh
07d_piecharts_SNPs.R		07d_piecharts_SNPs.R
08a_transcription.sh		08a_transcription.sh
08b_clustering_TPM.R		08b_clustering_TPM.R
08c_cluster_KEGG_enrichment.R		08c_cluster_KEGG_enrichment.R
08d_ballgown_MF_DE.R		08d_ballgown_MF_DE.R
README.md		README.md

Repository files navigation

01_gap_close_polish.sh

02_repeat_masking.sh

03_synteny.sh

04_short_RNA_QC.sh

05_gene_prediction.sh

06_functional_annotation.sh

07a_SNP_UpSet.R

07b_select_high_dens_SNPs.R

07c_circos_SNPs.sh

07d_piecharts_SNPs.R

08a_transcription.sh

08b_clustering_TPM.R

08c_cluster_KEGG_enrichment.R

08d_ballgown_MF_DE.R

About

Scripts for S. haematobium v3 manuscript

Report repository

Releases

No releases published

Packages

Contributors

Languages