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yazid-hoblos/README.md

About Me

Bioinformatician with a passion for systems biology applications and computational genomics.

Education

  • MS in Genomics @Université Paris-Saclay
  • BS in Bioinformatics, Minor in Mathematics @Lebanese American University

Research Interests

  • Network & systems biology
  • Comparative genomics & pangenomics
  • Method & pipeline development
  • AI & omics data analysis

Skills

Skills Nextflow


GitHub Stats
GitHub Streak

Key Projects

Systems & Network Biology

  • DiseaseNetAnalysis – Applied network science principles to study diseasome topology and communities
  • ENGA – Designed & implemented a network-based enhancement of the Genetic Algorithm with superior performance ENGRXiv Preprint
  • BoolNet-Model – Modeling and simulating tumor metastasis dynamics with boolean network models
  • TDA-PPIN – Protein complex prediction based on Topological Data Analysis (TDA) in PPI networks

Comparative Genomics & Pangenomics

  • PANORAMA – Network-based tool for macromolecular systems detection at pangenome scale [under review in PLOS Computational Biology] bioRxiv Preprint
  • PULkit – Novel rule-based annotation models for Polysaccharide Utilization Loci (PUL)
  • CompGenPipeline – Comparative genomics pipelines for automated gene duplication and TE analysis

Bioinformatic Pipeline & Tool Development

  • WES-Processing – Processing and analysis pipeline for WES data from Lebanese patients with rare disorders Journal: PLOS One
  • RNA-Toolkit – RNA modeling and analysis features
  • RNA-Fold – RNA folding evaluation and analysis library
  • Solaris – Synthetic biology toolkit for heterologous pathway transfer assistance — iGEM 2025 View on GitLab

AI & Omics Data Analysis

  • Carcinoma-Prediction – Transcriptomics-based carcinoma detection using supervised, unsupervised, and tree-based ML
  • CustomNeuralNetwork – Customizable Neural Network implementation from scratch
  • GNN-Sepsis – Graph neural networks for multi-omics data integration, sepsis prediction, and interpretability assessment

Get in Touch

Email: yazidhoblos5@gmail.com
LinkedIn: linkedin.com/in/yazid-hoblos

Open to collaboration on bioinformatics projects, genomics research, and computational biology initiatives!

Pinned Loading

  1. PULkit PULkit Public

    Python 2

  2. labgem/PANORAMA labgem/PANORAMA Public

    PANORAMA Project

    Python 8

  3. ENGA ENGA Public

    A Scale-free Networked Genetic Algorithm with Balanced Exploration and Exploitation

    Python

  4. CustomNeuralNetwork CustomNeuralNetwork Public

    Forked from raysas/neural-nets-library

    Python

  5. SOLARIS SOLARIS Public

    Jupyter Notebook 1

  6. GNN-Sepsis GNN-Sepsis Public

    Jupyter Notebook