Skip to content

basic mecat2cns grid integration#17

Open
flowers9 wants to merge 1 commit into
xiaochuanle:masterfrom
flowers9:grid
Open

basic mecat2cns grid integration#17
flowers9 wants to merge 1 commit into
xiaochuanle:masterfrom
flowers9:grid

Conversation

@flowers9

Copy link
Copy Markdown

This is very basic integration - the user specifies all the grid options through a -G option to mecat2cns, which then splits up the job as usual but calls grid for each partition run instead of doing it locally. Requires grid to be in the path, and it doesn't check for or handle job failure, just successful completion (so, in the event of failure, the main process may hang out forever).

A few extra internal options are used to pass values from the main program to the grid job.

This also corrects a small error in options.cpp where t.min_cov was checked twice and t.min_size was never checked.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant