In Weyrich23 you will find the code used for the manuscript entitled “Epigenetic signatures of social status in female free-ranging spotted hyenas (Crocuta crocuta)” by Vullioud et al. 2024, Communications Biology. To explore the script you can use the trimmed dataset available with the package. This package is not designed for general use. The full datasets are available here. Metadata are listed in Supplementary Material.
You can install the development version of Weyrich23 from GitHub with:
# install.packages("devtools")
devtools::install_github("vullioud/Weyrich23")The script for the analysis is available as a vignette and can be accessed as follows:
library(Weyrich23)
browseVignettes(package = "Weyrich23")The code for the functions used for the analysis is available here on github under the /R files.
The MBD-Seq data are uploaded to NCBI BioProject ID PRJNA1036526, including reference genome “crocuta.fasta”. Novel annotation file and read count tables are available here. Metadata are listed in Supplementary Material.