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Bugfix & Enhancement of fasta2select - #167

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volkamerlab:biopython_updatefrom
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Bugfix & Enhancement of fasta2select#167
gph82 wants to merge 2 commits into
volkamerlab:biopython_updatefrom
gph82:biopython_update

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@gph82

@gph82 gph82 commented Dec 18, 2025

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Description

Bugfix & Enhancement of structure.superposition.sequences.fasta2select

The bug was not actually detecting gap-less sequences. Even if corrected, gap-less sequences would error out, now they are handled properly.

The idea is to be minimally invasive wrt to existing logic for mapping pairwise alignments to residue selections.

Prospectively, logic behind this mapping could be re-written

…aracter between first and second sequence (old was checking 2nd vs 2nd)
…apless-sequences. Old: if gap char was "" (=None) and "-" the method would error out
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