Elias Steyaert changes for google cloud#28
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Adding the ETN file into my github
… the making of the DATA folder)
…thon_interpreter variable
MaybeJustJames
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MaybeJustJames
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May 31, 2024
| @@ -1,5 +1,4 @@ | |||
| #!/bin/bash | |||
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| # Import any manifest information. | ||
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| if [ -e "$DATA/irefindex_manifest" ] && ! "$TOOLS/irdata_database_action.py" "$DATABASE" "$SQL/import_irefindex_manifest.sql" "$DATA" $PSQL_OPTIONS ; then | ||
| if [ -e "$DATA/irefindex_manifest" ] && ! "${USE_PYTHON_INTERPRETER}" "$TOOLS/irdata_database_action.py" "$DATABASE" "$SQL/import_irefindex_manifest.sql" "$DATA" $PSQL_OPTIONS ; then |
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| if [ -e "$DATA/irefindex_manifest" ] && ! "${USE_PYTHON_INTERPRETER}" "$TOOLS/irdata_database_action.py" "$DATABASE" "$SQL/import_irefindex_manifest.sql" "$DATA" $PSQL_OPTIONS ; then | |
| if [ -e "$DATA/irefindex_manifest" ] && ! "$TOOLS/irdata_database_action.py" "$DATABASE" "$SQL/import_irefindex_manifest.sql" "$DATA" $PSQL_OPTIONS ; then |
| BHF_UCL_OTHER_FILE_PATTERN='*.txt' | ||
| BHF_UCL_PARSER='irdata_parse_bhfucl.sh' | ||
| BHF_UCL_IMPORT_TEMPLATE='import_mitab.sql' | ||
| BHF_UCL_IMPORT_TEMPLATE='import_mitab.sql' |
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| BHF_UCL_IMPORT_TEMPLATE='import_mitab.sql' | |
| BHF_UCL_IMPORT_TEMPLATE='import_mitab.sql' |
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| SYSDATA="$SYSPREFIX/var/lib/irdata/data" | ||
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| echo "marker1 $DATA" |
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| echo "marker1 $DATA" |
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| # Log the value of $1 | ||
| echo "main_script: \$1 is $1" > /home/irefindex/logfile.log | ||
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| # Log the value of $1 | |
| echo "main_script: \$1 is $1" > /home/irefindex/logfile.log |
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| # Split the data file into $PROCESS pieces. | ||
| # Pass each process its rank (0-based) and the total number of processes. | ||
| echo "can I see this echo, which is situated in my uniprotscript" >> /home/irefindex/logfile2.log |
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| echo "can I see this echo, which is situated in my uniprotscript" >> /home/irefindex/logfile2.log |
Adding week 4 to the ETN
adding week 5 and 6
Getting the code blocks cleaner when knitted
deleting an empty file
…sks/data instead of the home directory (through the postgresql.conf)
adding new info to the ETN up to wednesday 12/06/2024
minor changes
making a README file
minor changes
Updated the ETN for the evaluation
updating the planning
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