v1.4.0

What's Changed

• ♻️ Unify field-map reconstruction, dedup CLIs, and thread the unwrap stage by @vanandrew in #29

Full Changelog: v1.3.0...v1.4.0

v1.3.0

What's Changed

• 📝 Forbid AI attribution in commits and PR bodies by @vanandrew in #28
• 🐛 Invert MEDIC displacement in data space; drop redundant flip_sign by @vanandrew in #27

Full Changelog: v1.2.2...v1.3.0

v1.2.2

What's Changed

• ✨ enable free-threaded Python 3.14t support by @vanandrew in #23
• 📝 Update citation to published Imaging Neuroscience paper by @vanandrew in #25

Full Changelog: v1.2.1...v1.2.2

v1.2.1

v1.2.1

Added

• Typed Python API for all seven wk-* operations (#21). Each
  warpkit.scripts.<name> module now exports a typed function
  (medic, unwrap_phase, compute_fieldmap, apply_warp,
  convert_warp, convert_fieldmap, compute_jacobian) alongside a
  frozen Result dataclass. The new warpkit.api module re-exports all
  seven functions for from warpkit.api import medic usage by library
  integrators (nipype, fmriprep, etc.). Functions accept paths or
  nib.Nifti1Image inputs and raise ValueError instead of
  SystemExit; CLI behaviour is preserved exactly.
• BIDS sidecar resolution, mutex acquisition validation, image coercion,
  and noise-frame trimming consolidated into a new private
  warpkit.scripts._metadata module (previously duplicated across
  three scripts).

Changed

• ROMEO weights.h and voxel_quality.h kernels streamlined into
  single-pass (k, j, i) loops — boundary edges are skipped by
  construction, and the masked_mag shadow buffer is gone (#22).
  Per-edge FP arithmetic is unchanged, so the ROMEO goldens remain
  bit-exact.
• Ship the ROMEO MIT notice with binary distributions (#22). Declared
  via PEP 639 license-files = ["LICENSE", "include/romeo/LICENSE"],
  so wheels now carry both notices under *.dist-info/licenses/. The
  standalone wk-* bundles drop both LICENSE files into a LICENSES/
  directory.

Full diff: v1.2.0...v1.2.1

v1.2.0

v1.2.0

Changed

• Build backend migrated from setuptools to
  scikit-build-core
  (#20). The CMake build directory is now persisted at
  build/{wheel_tag}/, so ITK FetchContent and object files survive
  across uv sync invocations — cold builds still take ~80s for ITK
  5.4, but incremental rebuilds are quick.
• Eigen3 is now vendored via FetchContent + OVERRIDE_FIND_PACKAGE +
  ITK_USE_SYSTEM_EIGEN=ON, bypassing ITK's nested ITKInternalEigen3
  inner-CMake configure (whose cache would otherwise dangle when uv
  tears down its ninja env between syncs).
• setup.py, MANIFEST.in, and the _version.py pathway are gone.
  warpkit.__version__ now reads from importlib.metadata.version(),
  and the WARPKIT_DEV escape hatch is dropped.
• After editing src/warpkit.cpp, force a rebuild with
  uv sync --group dev --reinstall-package warpkit — editable
  auto-rebuild on import is disabled (uv's ephemeral isolated build
  env bakes a non-persistent ninja path into CMakeCache.txt).

Fixed

• Pin cmake<4 and Eigen 3.4.0 in the build environment to dodge two
  upstream regressions that crash the manylinux wheel build:
  CMake 4.2.3's manylinux wheel and Eigen 3.4.1's
  EIGEN_BUILD_CMAKE_PACKAGE interaction.

Full diff: v1.1.0...v1.2.0

v1.1.0

v1.1.0

Added

• Each GitHub release now ships standalone PyInstaller bundles for every
  wk-* CLI (wk-medic, wk-unwrap-phase, wk-compute-fieldmap,
  wk-apply-warp, wk-convert-warp, wk-convert-fieldmap,
  wk-compute-jacobian) on linux-x86_64, linux-aarch64, and
  macos-arm64, so users can run the pipeline without a Python install
  (#18).

Full diff: v1.0.1...v1.1.0

v1.0.1

v1.0.1

Fixed

• CI: py-publish was downloading every artifact in the run (including
  the Docker digest files from docker-build) into dist/, causing
  twine to reject the digests as InvalidDistribution and aborting the
  v1.0.0 PyPI upload. The download is now filtered to {wheel-*,sdist}.

Full diff: v1.0.0...v1.0.1

v1.0.0

v1.0.0

Tags now use the v prefix. Previous tags (0.0.1, 0.1.0, 0.1.1)
were unprefixed.

Changed

• Julia runtime removed. Phase unwrapping is now a self-contained
  C++17 port of ROMEO under include/romeo/. macOS wheels re-enabled.
• wk-* CLI suite replaces medic + extract_field_from_maps:
  wk-medic, wk-unwrap-phase, wk-compute-fieldmap, wk-apply-warp,
  wk-convert-warp, wk-convert-fieldmap, wk-compute-jacobian.
• wk-medic: --out-prefix required; acquisition params via
  --metadata or --TEs/--total-readout-time/--phase-encoding-direction
  (mutually exclusive); all flags dash-form.
• --from=auto / --transform-type=auto removed — input type must be
  declared explicitly. Multi-file --transform requires
  --transform-type=field.
• Dockerfile entrypoint: medic → wk-medic.

Added

• Type stubs for the compiled extension (warpkit_cpp.pyi + py.typed).
• linux/aarch64 wheels (native ARM runners), Python 3.11–3.14 matrix.
• Multi-arch Docker images (linux/amd64 + linux/arm64).

Fixed

• invert_displacement_field returned (X, Y, Z, 5) instead of
  (X, Y, Z, 3) (channel-axis padding bug).
• convert_warp 5D shape check rejected the canonical ANTs/AFNI
  single-warp layout (X, Y, Z, 1, 3).
• Stale vector intent codes are cleared on map outputs so 1-channel
  maps aren't misclassified as fields downstream.
• wk-unwrap-phase validates --magnitude/--metadata counts and
  --noiseframes up front; compute_field_maps validates mask shape.

Tooling

• Python ≥ 3.11; lowercase snake_case enforced (incl. MR-physics symbols).
• uv + ruff + pyright + setuptools-scm; gitmoji commit-msg hook.
• Tests 14 → 201; coverage 71% → 99% on scripts + utilities.

Full diff: 0.1.1...v1.0.0

0.1.1

https://pypi.org/project/warpkit/0.1.1/

• Fix for docker build release

0.1.0

https://pypi.org/project/warpkit/0.1.0/

• Initial Release