GuangyuWangLab2021 / cellDancer Star 72 Code Issues Pull requests Discussions Predict RNA velocity through deep learning transcriptomics single-cell-genomics single-cell-rna-seq rna-velocity-estimation rna-velocity cell-fate rna-splicing rna-splicing-analysis Updated Dec 12, 2023 Jupyter Notebook
pyrovelocity / pyrovelocity Star 49 Code Issues Pull requests Discussions 𝒫robabilistic modeling of RNA velocity ⬱ probabilistic-programming transcriptomics pyro probabilistic-models single-cell-genomics single-cell-rna-seq rna-velocity-estimation multiomics deep-generative-model developmental-trajectories rna-velocity rna-splicing single-cell-multiomics cell-fate-determination rna-splicing-analysis Updated Jul 2, 2026 Python
jalwillcox / Calculate-PSI Star 4 Code Issues Pull requests A script used to calculate percent spliced-in (PSI) values from bulk RNA sequencing data. rna-seq rnaseq psi rna-seq-analysis bulk-rna-seq splicing rna-splicing percent-spliced-in rna-splicing-analysis Updated May 27, 2022 Shell
daklab / IsoformGazer Star 2 Code Issues Pull requests Discussions A webtool for visualizing alternative RNA isoforms across integrated long-read RNA-seq and pseudobulked single-cell short-read RNA-seq data. bioinformatics data-visualization alternative-splicing data-analysis rna splicing-event transcriptomics isoforms gencode single-cell-rna-seq single-cell-analysis splicing-analyses data-visualization-dashboard long-read-sequencing isoform-diversity rna-splicing-analysis short-read-sequencing Updated Jun 23, 2026 Python