proteowizard

Here are 3 public repositories matching this topic...

LizzyParkerPannell / Untargeted_metabolomics_workflow

Collaborative workflow for untargeted metabolomics data processing and analysis using open-source tools. https://doi.org/10.3390/metabo13040463

mass-spectrometry lc-ms xcms maldi-tof-ms untargeted-metabolomics metaboanalyst proteowizard maldiquant

Updated Mar 23, 2023
R

mriffle / nf-skyline-dia-ms

Star

Nextflow workflow for performing DIA proteomics

workflow bioinformatics nextflow proteomics dia encyclopedia qc skyline nextflow-pipeline dia-nn proteowizard

Updated May 15, 2026
Nextflow

Conversion and annotation pipeline for Waters .raw MS¹/MSⁿ data (MSe & DDA). Wraps msconvert, extracts _extern metadata, assigns MS levels, fixes precursor info, and outputs analysis‑ready .mzML files compatible with MZmine 3.

conversion mass-spectrometry mzml qc metadata-validation msconvert proteowizard

Updated May 25, 2026
Python

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