scDFM: Distributional Flow Matching for Robust Single-Cell Perturbation Prediction (ICLR 2026)
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Apr 22, 2026 - Python
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perturbation-prediction
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Code for "Foundation Models Improve Perturbation Response Prediction"
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Apr 16, 2026 - Jupyter Notebook
Chreode: A Cell World Model for One-Step Temporal Dynamics and Perturbation Prediction (arXiv:2605.28111)
scrna-seq single-cell generative-models waddington foundation-model world-model perturbation-prediction
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Jun 3, 2026 - Python
Trackability regimes for single-cell perturbation prediction: LAOT, synthetic phase transitions, and biological benchmarks.
np-hard single-cell optimal-transport polynomial-time computational-complexity single-cell-rna-seq single-cell-analysis optimal-transport-algorithms perturbation-prediction icml-2026 linear-assignment laot scgen cellot
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May 26, 2026 - Jupyter Notebook
VCBench: capability-stratified benchmark for single-cell foundation models
benchmark machine-learning bioinformatics deep-learning scrna-seq reproducibility transcriptomics single-cell gene-regulatory-networks foundation-models grn-inference perturbation-prediction cross-species-transfer virtual-cells virtual-cell-models
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Jun 24, 2026 - Python
MEGA-ODE: Biologically Structured, Generalizable and Navigable Continuous Perturbation Dynamics from Sparse Omics
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Jun 26, 2026 - Python
Virtual cell challenge 2025
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Dec 1, 2025 - Python
A confound-aware toolkit for evaluating foundation-model in-silico perturbation predictions.
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Jun 25, 2026 - Python
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