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ahmedanees-m / pen-assemble

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PEN-ASSEMBLE: Automated Strategy and Scoring Engine for Molecular Bridge-recombinase Library Engineering | IS110-family design pipeline, 1,029 candidates, 5/5 pre-registered predictions | Part of PEN-STACK

python bioinformatics synthetic-biology computational-biology protein-design genome-editing genetic-engineering gene-therapy pen-stack proteinmpnn genome-atlas bridge-recombinase is110-family penscore deimmunization mech-class
  • Updated May 26, 2026
  • HTML

ahmedanees-m / pen-compare

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Hierarchical certification framework (5-gate TrueWriterScore v3.2) for 1,058 genome editors - capstone of PEN-STACK. ISCro4 confirmed as sole TRUE_WRITER with robustness=1.000.

python machine-learning bioinformatics ruff genome-editing genetic-engineering pre-registration streamlit is110 rag-llm agentic-ai pen-stack bridge-recombinase certification-framework true-writer pen-compare molecular-pen writer-not-scissors bridge-rna
  • Updated May 27, 2026
  • Python

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