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romanbaptista / trim

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A modular, SLURM‑compatible HPC pipeline for adapter removal and quality trimming of paired‑end FASTQ sequencing data using BBDUK or Trimmomatic, providing reproducible, preflight‑validated, and restart‑safe trimming suitable for large‑scale cohort analysis.

bash bioinformatics quality-control pipeline genomics hpc reproducible-research sequencing slurm trimming fastq adapter-trimming trimmomatic bbduk nextflow-alternative
  • Updated May 8, 2026
  • Shell

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