Tracktable: moving object trajectory analysis in C++ and Python
An interval branch-and-prune (iBP) implementation/testbed
C implementation of interval Branch-and-Prune methods for the 3D interval discretizable distance geometry problem, with applications to molecular structure reconstruction.
pdb-parser is a lightweight Python toolkit for processing NMR Protein Data Bank (PDB) structures and generating distance and torsion-angle constraints for Distance Geometry Problem (DGP) workflows. It extracts backbone and hydrogen atoms from protein chains and builds reordered DDGP/iDDGP instances for protein structure determination.
Historical MATLAB thesis code for distance geometry and protein structure reconstruction.
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