BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons 🦠

Reusable bacterial genome mining pipeline for assembled genome FASTA files using QUAST, Bakta, antiSMASH, GECCO, and combined BGC summary reporting.

Python CLI tool & package. An LLM-guided Post-Annotation Synthesizer that turns complex prokaryotic genome annotations into human-readable summaries & machine-readable JSON.

AI-assisted pipeline for mining candidate Staphylococcus invasome and virulence-associated genes from assembled genome FASTA files.

A tool to take annotation files from bakta or prokka and produce a human readable report.

Condense and summarize many results form BAKTA into CSV for statistics

Minimal pixi proof-of-concept for biologists — Prokka, Bakta and Snakemake in four isolated environments

Reusable comparative bacterial genomics pipeline for assembled bacterial genome FASTA files using QUAST, Bakta, FastANI, Panaroo, and FastTree.