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build(deps): Bump the python group across 1 directory with 13 updates - #300

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build(deps): Bump the python group across 1 directory with 13 updates#300
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Bumps the python group with 13 updates in the / directory:

Package From To
numpy 2.4.2 2.4.6
pandas 3.0.1 3.0.5
pydantic 2.12.5 2.13.4
xarray 2026.2.0 2026.7.0
scipy 1.17.0 1.17.1
pytest 9.0.2 9.1.1
pytest-cov 7.0.0 7.1.0
typing-extensions 4.15.0 4.16.0
ipython 9.10.0 9.16.1
shibuya 2026.7.11 2026.7.12
ipykernel 7.2.0 7.3.0
jupytext 1.19.4 1.19.5
sphinx-codeautolink 0.18.1 0.19.0

Updates numpy from 2.4.2 to 2.4.6

Release notes

Sourced from numpy's releases.

v2.4.6 (May 18, 2026)

NumPy 2.4.6 Release Notes

NumPy 2.4.6 is a quick release that fixes a regression discovered in the 2.4.5 release.

This release supports Python versions 3.11-3.14

Contributors

A total of 4 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • !EarlMilktea
  • Charles Harris
  • Sebastian Berg
  • Warren Weckesser

Pull requests merged

A total of 4 pull requests were merged for this release.

  • #31444: MAINT: Prepare 2.4.x for further development
  • #31453: BUG: Fix regression in arr.conj()
  • #31459: BUG: np.linalg.svd(..., hermitian=True) returns non-unitary...
  • #31460: BUG: Don't call INCREF/DECREF on descr in NpyStringAcquireAllocator...

v2.4.5 (May 15, 2026)

NumPy 2.4.5 Release Notes

NumPy 2.4.5 is a patch release that fixes bugs discovered after the 2.4.4 release, has some typing improvements, and maintains infrastructure.

This release supports Python versions 3.11-3.14

Contributors

A total of 17 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Aleksei Nikiforov
  • Anarion Zuo +
  • Ankit Ahlawat
  • Breno Favaretto +
  • Charles Harris
  • Igor Krivenko +
  • Ijtihed Kilani +
  • Joren Hammudoglu
  • Maarten Baert +

... (truncated)

Commits
  • b832a09 Merge pull request #31462 from charris/prepare-2.4.6
  • 57cc147 REL: Prepare for the NumPy 2.4.6 release
  • 0c72b0b Merge pull request #31459 from charris/backport-31347
  • 9778d26 BUG: core: Don't call INCREF/DECREF on descr in NpyStringAcquireAllocator. (#...
  • e0e3876 BUG: core: Don't call INCREF/DECREF on descr in NpyStringAcquireAllocator. (#...
  • d1bffeb BUG: np.linalg.svd(..., hermitian=True) returns non-unitary vh (#31347)
  • 8d8d7e5 Merge pull request #31453 from seberg/issue-31452
  • bddaab7 BUG: Fix regression in arr.conj()
  • 37a1ecc Merge pull request #31444 from charris/begin-2.4.6
  • 3c0e043 MAINT: Prepare 2.4.x for further development
  • Additional commits viewable in compare view

Updates pandas from 3.0.1 to 3.0.5

Release notes

Sourced from pandas's releases.

pandas 3.0.5

We are pleased to announce the release of pandas 3.0.5. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version.

See the full whatsnew for a list of all the changes.

Pandas 3.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

pandas 3.0.4

We are pleased to announce the release of pandas 3.0.4. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version.

See the full whatsnew for a list of all the changes.

Pandas 3.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

pandas 3.0.3

We are pleased to announce the release of pandas 3.0.3. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version.

See the full whatsnew for a list of all the changes.

Pandas 3.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

... (truncated)

Commits
  • e68db09 RLS: 3.0.5
  • 0697623 Backport PR #66428: DOC: update whatsnew for 3.0.5 (#66430)
  • 5d846d0 Backport PR #66090 on branch 3.0.x (BLD: exclude numpy 2.5.0 when building wh...
  • bef7a2b Backport PR #66169 on branch 3.0.x (CI: Fix pyarrow-nightly job (stale nightl...
  • 8188eb1 RLS: 3.0.4 (#66079)
  • bd35f15 [3.0.x] BUG: fix CoW issue in eval() (#66072)
  • 6195872 [backport 3.0.x] BUG: anchor whole alternation in Series.str.match for PyArro...
  • 70313be Backport PR #66051 on branch 3.0.x (BUG: fix regression in DataFrame setitem ...
  • 57ed3e2 [backport 3.0.x] Bump pypa/cibuildwheel from 3.4.1 to 4.1.0 (#65934) (#66026)
  • f9693fc [backport 3.0.x] BUG(pandas 3.0 regression): drop(index=...) doesn't accept N...
  • Additional commits viewable in compare view

Updates pydantic from 2.12.5 to 2.13.4

Release notes

Sourced from pydantic's releases.

v2.13.4 2026-05-06

v2.13.4 (2026-05-06)

What's Changed

Packaging

Fixes

Full Changelog: pydantic/pydantic@v2.13.3...v2.13.4

v2.13.3 2026-04-20

v2.13.3 (2026-04-20)

What's Changed

Fixes

Full Changelog: pydantic/pydantic@v2.13.2...v2.13.3

v2.13.2 2026-04-17

v2.13.2 (2026-04-17)

What's Changed

Fixes

  • Fix ValidationInfo.field_name missing with model_validate_json() by @​Viicos in #13084

Full Changelog: pydantic/pydantic@v2.13.1...v2.13.2

v2.13.1 2026-04-15

v2.13.1 (2026-04-15)

What's Changed

Fixes

Full Changelog: pydantic/pydantic@v2.13.0...v2.13.1

v2.13.0 2026-04-13

... (truncated)

Changelog

Sourced from pydantic's changelog.

v2.13.4 (2026-05-06)

GitHub release

What's Changed

Packaging

Fixes

v2.13.3 (2026-04-20)

GitHub release

What's Changed

Fixes

v2.13.2 (2026-04-17)

GitHub release

What's Changed

Fixes

  • Fix ValidationInfo.field_name missing with model_validate_json() by @​Viicos in #13084

v2.13.1 (2026-04-15)

GitHub release

What's Changed

Fixes

v2.13.0 (2026-04-13)

GitHub release

The highlights of the v2.13 release are available in the blog post.

... (truncated)

Commits
  • cf67d4b Fix linting
  • f0d8a21 Prepare release v2.13.4
  • 5e3fe1d Check for pydantic tag pattern in CI
  • 7f9edcc Document tagging conventions
  • b46a0c9 Adapt pydantic-core linker flags on macOS
  • 50629c8 Update to PyPy 7.3.22
  • 8522ebb Preserve RootModel core metadata
  • a37f3af Adapt MISSING sentinel test to work with unreleased typing_extensions ver...
  • 909259a Remove Logfire example in documentation
  • 2c4174c Bump libc from 0.2.155 to 0.2.185
  • Additional commits viewable in compare view

Updates xarray from 2026.2.0 to 2026.7.0

Release notes

Sourced from xarray's releases.

v2026.07.0

This release adds support for Dask's query-optimizing expression arrays, along with new day_of_week and day_of_year datetime accessor attributes. It also includes a number of bug fixes, notably for a performance regression in :py:meth:Coordinates.to_index, Zarr fill_value round-tripping, and excessive memory use in drop_encoding.

Thanks to the 25 contributors to this release: Davis Bennett, Deepak Cherian, Ian Hunt-Isaak, Illviljan, Jonathan Dung, Julia Signell, Justus Magin, Kai Mühlbauer, MJSHANG, Mark Harfouche, Mathias Hauser, Matt Van Horn, Matthew Rocklin, Max Jones, Maximilian Roos, Nick Hodgskin, S Anand, Spencer Clark, Sreekant Baheti, Timothy Hodson, Tom Nicholas, Vincent Gao, Wali Reheman, Wei Ji and eeshsaxena

What's Changed

... (truncated)

Commits

Updates scipy from 1.17.0 to 1.17.1

Release notes

Sourced from scipy's releases.

SciPy 1.17.1 Release Notes

SciPy 1.17.1 is a bug-fix release with no new features compared to 1.17.0.

Authors

  • Name (commits)
  • Evgeni Burovski (5)
  • Lucas Colley (1)
  • Christoph Gohlke (1)
  • Ralf Gommers (6)
  • Matt Haberland (5)
  • Matthias Koeppe (1)
  • Nick ODell (1)
  • Ilhan Polat (10)
  • Tyler Reddy (44)
  • Martin Schuck (3)
  • Dan Schult (3)
  • stratakis (1) +
  • ਗਗਨਦੀਪ ਸਿੰਘ (Gagandeep Singh) (1)

A total of 13 people contributed to this release. People with a "+" by their names contributed a patch for the first time. This list of names is automatically generated, and may not be fully complete.

Complete issue list, PR list, and release asset hashes are available in the associated README.txt.

Commits
  • 527eb7f REL: 1.17.1 release commit [wheel build]
  • f11663b Merge pull request #24584 from tylerjereddy/treddy_prep_1.17.1
  • 2c49e68 DOC: PR 24584 revisions
  • 400fa15 safely convert index dtypes to intc for csgraph and superLU
  • 8c70404 MAINT: PR 24584 revisions [wheel build]
  • 6dda8c1 BUG: PR 24584 revisions
  • 4a187e5 DOC: PR 24584 revisions
  • 463ee9f ENH: linalg/inv: re-enable overwrite_a for 2D inputs (#24442)
  • df746ee BUG: linalg: restore dtypes in inv, solve, det
  • 246bfee MAINT:optimize: Enable multi-phase init to DIRECT
  • Additional commits viewable in compare view

Updates pytest from 9.0.2 to 9.1.1

Release notes

Sourced from pytest's releases.

9.1.1

pytest 9.1.1 (2026-06-19)

Bug fixes

  • #14220: Fixed a logic bug in pytest.RaisesGroup which would might cause it to display incorrect "It matches FooError() which was paired with BarError" messages.
  • #14591: Fixed a regression in pytest 9.1.0 which caused overriding a parametrized fixture with an indirect @​pytest.mark.parametrize to fail with "duplicate parametrization of '<fixture name>'".
  • #14606: Fixed list-item typing errors from mypy in @pytest.mark.parametrize <pytest.mark.parametrize ref> argvalues parameter.
  • #14608: Fixed a regression in pytest 9.1.0 where conftest.py files located in <invocation dir>/test* were no longer loaded as initial conftests when invoked without arguments. This could cause certain hooks (like pytest_addoption) in these files to not fire.

9.1.0

pytest 9.1.0 (2026-06-13)

Removals and backward incompatible breaking changes

  • #14533: When using --doctest-modules, autouse fixtures with module, package or session scope that are defined inline in Python test modules (not plugins or conftests) will now possibly execute twice.

    If this is undesirable, move the fixture definition to a conftest.py file if possible.

    Technical explanation for those interested: When using --doctest-modules, pytest possibly collects Python modules twice, once as pytest.Module and once as a DoctestModule (depending on the configuration). Due to improvements in pytest's fixture implementation, if e.g. the DoctestModule collects a fixture, it is now visible to it only, and not to the Module. This means that both need to register the fixtures independently.

Deprecations (removal in next major release)

  • #10819: Added a deprecation warning for class-scoped fixtures defined as instance methods (without @classmethod). Such fixtures set attributes on a different instance than the test methods use, leading to unexpected behavior. Use @classmethod decorator instead -- by yastcher.

    See 10819 and 14011.

  • #12882: Calling request.getfixturevalue() <pytest.FixtureRequest.getfixturevalue> during teardown to request a fixture that was not already requested is now deprecated and will become an error in pytest 10.

    See dynamic-fixture-request-during-teardown for details.

  • #13409: Using non-~collections.abc.Collection iterables (such as generators, iterators, or custom iterable objects) for the argvalues parameter in @pytest.mark.parametrize <pytest.mark.parametrize ref> and metafunc.parametrize <pytest.Metafunc.parametrize> is now deprecated.

    These iterables get exhausted after the first iteration, leading to tests getting unexpectedly skipped in cases such as running pytest.main() multiple times, using class-level parametrize decorators, or collecting tests multiple times.

    See parametrize-iterators for details and suggestions.

  • #13946: The private config.inicfg attribute is now deprecated. Use config.getini() <pytest.Config.getini> to access configuration values instead.

    See config-inicfg for more details.

  • #14004: Passing baseid to ~pytest.FixtureDef or nodeid strings to fixture registration APIs is now deprecated. These are internal pytest APIs that are used by some plugins.

... (truncated)

Commits
  • cf470ec Prepare release version 9.1.1
  • e0c8ce6 Merge pull request #14625 from pytest-dev/patchback/backports/9.1.x/a07c31a97...
  • 1b82d16 Merge pull request #14624 from pytest-dev/patchback/backports/9.1.x/b375b79ec...
  • 501c4bc Merge pull request #14596 from bluetech/doc-classmethod
  • b61f588 Merge pull request #14622 from chrisburr/fix-14608-initial-conftest-test-subdir
  • 9a567e0 [automated] Update plugin list (#14617) (#14618)
  • ef8b299 Merge pull request #14620 from pytest-dev/patchback/backports/9.1.x/680f9f3ed...
  • 66abd07 Merge pull request #14220 from bysiber/fix-stale-iexp-raisesgroup
  • 79fbf93 Merge pull request #14612 from pytest-dev/patchback/backports/9.1.x/974ed48b6...
  • 0d312eb Merge pull request #14611 from bluetech/parametrize-argvalues-typing
  • Additional commits viewable in compare view

Updates pytest-cov from 7.0.0 to 7.1.0

Changelog

Sourced from pytest-cov's changelog.

7.1.0 (2026-03-21)

  • Fixed total coverage computation to always be consistent, regardless of reporting settings. Previously some reports could produce different total counts, and consequently can make --cov-fail-under behave different depending on reporting options. See [#641](https://github.com/pytest-dev/pytest-cov/issues/641) <https://github.com/pytest-dev/pytest-cov/issues/641>_.

  • Improve handling of ResourceWarning from sqlite3.

    The plugin adds warning filter for sqlite3 ResourceWarning unclosed database (since 6.2.0). It checks if there is already existing plugin for this message by comparing filter regular expression. When filter is specified on command line the message is escaped and does not match an expected message. A check for an escaped regular expression is added to handle this case.

    With this fix one can suppress ResourceWarning from sqlite3 from command line::

    pytest -W "ignore:unclosed database in <sqlite3.Connection object at:ResourceWarning" ...

  • Various improvements to documentation. Contributed by Art Pelling in [#718](https://github.com/pytest-dev/pytest-cov/issues/718) <https://github.com/pytest-dev/pytest-cov/pull/718>_ and "vivodi" in [#738](https://github.com/pytest-dev/pytest-cov/issues/738) <https://github.com/pytest-dev/pytest-cov/pull/738>. Also closed [#736](https://github.com/pytest-dev/pytest-cov/issues/736) <https://github.com/pytest-dev/pytest-cov/issues/736>.

  • Fixed some assertions in tests. Contributed by in Markéta Machová in [#722](https://github.com/pytest-dev/pytest-cov/issues/722) <https://github.com/pytest-dev/pytest-cov/pull/722>_.

  • Removed unnecessary coverage configuration copying (meant as a backup because reporting commands had configuration side-effects before coverage 5.0).

Commits
  • 66c8a52 Bump version: 7.0.0 → 7.1.0
  • f707662 Make the examples use pypy 3.11.
  • 6049a78 Make context test use the old ctracer (seems the new sysmon tracer behaves di...
  • 8ebf20b Update changelog.
  • 861d30e Remove the backup context manager - shouldn't be needed since coverage 5.0, ...
  • fd4c956 Pass the precision on the nulled total (seems that there's some caching goion...
  • 78c9c4e Only run the 3.9 on older deps.
  • 4849a92 Punctuation.
  • 197c35e Update changelog and hopefully I don't forget to publish release again :))
  • 14dc1c9 Update examples to use 3.11 and make the adhoc layout example look a bit more...
  • Additional commits viewable in compare view

Updates typing-extensions from 4.15.0 to 4.16.0

Release notes

Sourced from typing-extensions's releases.

4.16.0

No changes since 4.16.0rc2.

Changes since 4.15.0:

  • Make typing_extensions.TypeAliasType's __module__ attribute writable. Backport of CPython PR #149172.
  • Fix setting of __required_keys__ and __optional_keys__ when inheriting keys with the same name.
  • Add support for AsyncIterator, io.Reader, io.Writer and os.PathLike protocols as bases for other protocols.
  • Fix incorrect behaviour on Python 3.9 and Python 3.10 that meant that calling isinstance with typing_extensions.Concatenate[...] or typing_extensions.Unpack[...] as the first argument could have a different result in some situations depending on whether or not a profiling function had been set using sys.setprofile. This affected both CPython and PyPy implementations. Patch by Brian Schubert.
  • Fix __init_subclass__() behavior in the presence of multiple inheritance involving an @deprecated-decorated base class. Backport of CPython PR #138210 by Brian Schubert.
  • Raise TypeError when attempting to subclass typing_extensions.ParamSpec on Python 3.9. The typing implementation has always raised an error, and the typing_extensions implementation has raised an error on Python 3.10+ since typing_extensions v4.6.0. Patch by Brian Schubert.
  • Add the bound, covariant, contravariant, and infer_variance parameters to TypeVarTuple.
  • Officially support the bound, covariant, contravariant and infer_variance parameters to ParamSpec. Improve the validation of these parameters at runtime.
  • Rename typing_extensions.Sentinel to typing_extensions.sentinel, following the name that has been adopted for builtins.sentinel on Python 3.15. typing_extensions.Sentinel is retained as a soft-deprecated alias for backwards compatibility.
  • Add support for pickling sentinels.
  • Sentinels now preserve their identity when copied or deep-copied.
  • Deprecate passing name as a keyword argument or repr as a positional argument to the sentinel constructor.
  • The default repr of a sentinel X = sentinel("X") is now X rather than <X>.
  • Deprecate arbitrary attribute assignments to sentinels.
  • Deprecate subclassing sentinels.
  • Add support for Python 3.15.
  • Avoid a DeprecationWarning when deprecated is applied to a coroutine function on Python 3.14.0.

4.16.0rc2

Changes since 4.16.0rc1:

  • Avoid a DeprecationWarning when deprecated is applied to a coroutine function on Python 3.14.0.

Changes since 4.15.0:

  • Make typing_extensions.TypeAliasType's __module__ attribute writable. Backport of CPython PR #149172.
  • Fix setting of __required_keys__ and __optional_keys__ when inheriting keys with the same name.
  • Add support for AsyncIterator, io.Reader, io.Writer and os.PathLike protocols as bases for other protocols.
  • Fix incorrect behaviour on Python 3.9 and Python 3.10 that meant that calling isinstance with typing_extensions.Concatenate[...] or typing_extensions.Unpack[...] as the first argument could have a different result in some situations depending on whether or not a profiling function had been set using sys.setprofile. This affected both CPython and PyPy implementations. Patch by Brian Schubert.
  • Fix __init_subclass__() behavior in the presence of multiple inheritance involving an @deprecated-decorated base class. Backport of CPython PR #138210 by Brian Schubert.
  • Raise TypeError when attempting to subclass typing_extensions.ParamSpec on Python 3.9. The typing implementation has always raised an error, and the typing_extensions implementation has raised an error on Python 3.10+ since typing_extensions v4.6.0. Patch by Brian Schubert.
  • Add the bound, covariant, contravariant, and infer_variance parameters to TypeVarTuple.
  • Officially support the bound, covariant, contravariant and infer_variance parameters to ParamSpec. Improve the validation of these parameters at runtime.
  • Rename typing_extensions.Sentinel to typing_extensions.sentinel, following the name that has been adopted for builtins.sentinel on Python 3.15. typing_extensions.Sentinel is retained as a soft-deprecated alias for backwards compatibility.
  • Add support for pickling sentinels.
  • Sentinels now preserve their identity when copied or deep-copied.
  • Deprecate passing name as a keyword argument or repr as a positional argument to the sentinel constructor.
  • The default repr of a sentinel X = sentinel("X") is now X rather than <X>.
  • Deprecate arbitrary attribute assignments to sentinels.
  • Deprecate subclassing sentinels.
  • Add support for Python 3.15.

4.16.0rc1

  • Make typing_extensions.TypeAliasType's __module__ attribute writable. Backport of CPython PR #149172.
  • Fix setting of __required_keys__ and __optional_keys__ when inheriting keys with the same name.

... (truncated)

Changelog

Sourced from typing-extensions's changelog.

Release 4.16.0 (July 2, 2025)

No user-facing changes since 4.16.0rc2.

Release 4.16.0rc2 (June 25, 2026)

  • Avoid a DeprecationWarning when deprecated is applied to a coroutine function on Python 3.14.0.

Release 4.16.0rc1 (June 24, 2026)

  • Make typing_extensions.TypeAliasType's __module__ attribute writable. Backport of CPython PR #149172.
  • Fix setting of __required_keys__ and __optional_keys__ when inheriting keys with the same name.
  • Add support for AsyncIterator, io.Reader, io.Writer and os.PathLike protocols as bases for other protocols.
  • Fix incorrect behaviour on Python 3.9 and Python 3.10 that meant that calling isinstance with typing_extensions.Concatenate[...] or typing_extensions.Unpack[...] as the first argument could have a different result in some situations depending on whether or not a profiling function had been set using sys.setprofile. This affected both CPython and PyPy implementations. Patch by Brian Schubert.
  • Fix __init_subclass__() behavior in the presence of multiple inheritance involving an @deprecated-decorated base class. Backport of CPython PR #138210 by Brian Schubert.
  • Raise TypeError when attempting to subclass typing_extensions.ParamSpec on Python 3.9. The typing implementation has always raised an error, and the typing_extensions implementation has raised an error on Python 3.10+ since typing_extensions v4.6.0. Patch by Brian Schubert.
  • Add the bound, covariant, contravariant, and infer_variance parameters to TypeVarTuple.
  • Officially support the bound, covariant, contravariant and infer_variance parameters to ParamSpec. Improve the validation of these parameters at runtime.
  • Rename typing_extensions.Sentinel to typing_extensions.sentinel, following the name that has been adopted for builtins.sentinel on Python 3.15. typing_extensions.Sentinel is retained as a soft-deprecated alias for backwards compatibility.
  • Add support for pickling sentinels.
  • Sentinels now preserve their identity when copied or deep-copied.
  • Deprecate passing name as a keyword argument or repr as a positional argument to the sentinel constructor.
  • The default repr of a sentinel X = sentinel("X") is now X rather than <X>.
  • Deprecate arbitrary attribute assignments to sentinels.
  • Deprecate subclassing sentinels.
  • Add support for Python 3.15.
Commits

Updates ipython from 9.10.0 to 9.16.1

Commits

Updates shibuya from 2026.7.11 to 2026.7.12

Release notes

Sourced from shibuya's releases.

2026.7.12

   🐞 Bug Fixes

    View changes on GitHub
Changelog

Sourced from shibuya's changelog.

2026.7.12

  • Fix: Fix social icons display.
  • Fix: Use underline for links.
Commits

Updates ipykernel from 7.2.0 to 7.3.0

Release notes

Sourced from ipykernel's releases.

v7.3.0

7.3.0

(Full Changelog)

New features added

Enhancements made

Bugs fixed

Maintenance and upkeep improvements

  • build docs on latest python #1525 (@​Carreau)<...

    Description has been truncated

@dependabot
build(deps): Bump the python group across 1 directory with 13 updates
1feda62 
Bumps the python group with 13 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [numpy](https://github.com/numpy/numpy) | `2.4.2` | `2.4.6` |
| [pandas](https://github.com/pandas-dev/pandas) | `3.0.1` | `3.0.5` |
| [pydantic](https://github.com/pydantic/pydantic) | `2.12.5` | `2.13.4` |
| [xarray](https://github.com/pydata/xarray) | `2026.2.0` | `2026.7.0` |
| [scipy](https://github.com/scipy/scipy) | `1.17.0` | `1.17.1` |
| [pytest](https://github.com/pytest-dev/pytest) | `9.0.2` | `9.1.1` |
| [pytest-cov](https://github.com/pytest-dev/pytest-cov) | `7.0.0` | `7.1.0` |
| [typing-extensions](https://github.com/python/typing_extensions) | `4.15.0` | `4.16.0` |
| [ipython](https://github.com/ipython/ipython) | `9.10.0` | `9.16.1` |
| [shibuya](https://github.com/lepture/shibuya) | `2026.7.11` | `2026.7.12` |
| [ipykernel](https://github.com/ipython/ipykernel) | `7.2.0` | `7.3.0` |
| [jupytext](https://github.com/jupytext/jupytext) | `1.19.4` | `1.19.5` |
| [sphinx-codeautolink](https://github.com/felix-hilden/sphinx-codeautolink) | `0.18.1` | `0.19.0` |



Updates `numpy` from 2.4.2 to 2.4.6
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.4.2...v2.4.6)

Updates `pandas` from 3.0.1 to 3.0.5
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Commits](pandas-dev/pandas@v3.0.1...v3.0.5)

Updates `pydantic` from 2.12.5 to 2.13.4
- [Release notes](https://github.com/pydantic/pydantic/releases)
- [Changelog](https://github.com/pydantic/pydantic/blob/main/HISTORY.md)
- [Commits](pydantic/pydantic@v2.12.5...v2.13.4)

Updates `xarray` from 2026.2.0 to 2026.7.0
- [Release notes](https://github.com/pydata/xarray/releases)
- [Commits](pydata/xarray@v2026.02.0...v2026.07.0)

Updates `scipy` from 1.17.0 to 1.17.1
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](scipy/scipy@v1.17.0...v1.17.1)

Updates `pytest` from 9.0.2 to 9.1.1
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@9.0.2...9.1.1)

Updates `pytest-cov` from 7.0.0 to 7.1.0
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-cov@v7.0.0...v7.1.0)

Updates `typing-extensions` from 4.15.0 to 4.16.0
- [Release notes](https://github.com/python/typing_extensions/releases)
- [Changelog](https://github.com/python/typing_extensions/blob/main/CHANGELOG.md)
- [Commits](python/typing_extensions@4.15.0...4.16.0)

Updates `ipython` from 9.10.0 to 9.16.1
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](ipython/ipython@9.10.0...9.16.1)

Updates `shibuya` from 2026.7.11 to 2026.7.12
- [Release notes](https://github.com/lepture/shibuya/releases)
- [Changelog](https://github.com/lepture/shibuya/blob/main/docs/changelog.rst)
- [Commits](lepture/shibuya@2026.7.11...2026.7.12)

Updates `ipykernel` from 7.2.0 to 7.3.0
- [Release notes](https://github.com/ipython/ipykernel/releases)
- [Changelog](https://github.com/ipython/ipykernel/blob/main/CHANGELOG.md)
- [Commits](ipython/ipykernel@v7.2.0...v7.3.0)

Updates `jupytext` from 1.19.4 to 1.19.5
- [Release notes](https://github.com/jupytext/jupytext/releases)
- [Changelog](https://github.com/jupytext/jupytext/blob/main/CHANGELOG.md)
- [Commits](jupytext/jupytext@v1.19.4...v1.19.5)

Updates `sphinx-codeautolink` from 0.18.1 to 0.19.0
- [Release notes](https://github.com/felix-hilden/sphinx-codeautolink/releases)
- [Commits](felix-hilden/sphinx-codeautolink@v0.18.1...v0.19.0)

---
updated-dependencies:
- dependency-name: numpy
  dependency-version: 2.4.6
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python
- dependency-name: pandas
  dependency-version: 3.0.5
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python
- dependency-name: pydantic
  dependency-version: 2.13.4
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: xarray
  dependency-version: 2026.7.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: scipy
  dependency-version: 1.17.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python
- dependency-name: pytest
  dependency-version: 9.1.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: pytest-cov
  dependency-version: 7.1.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: typing-extensions
  dependency-version: 4.16.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: ipython
  dependency-version: 9.16.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: shibuya
  dependency-version: 2026.7.12
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python
- dependency-name: ipykernel
  dependency-version: 7.3.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: jupytext
  dependency-version: 1.19.5
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python
- dependency-name: sphinx-codeautolink
  dependency-version: 0.19.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Aug 7, 2026
@thomaspinder
thomaspinder enabled auto-merge (squash) August 7, 2026 08:43
@thomaspinder
thomaspinder merged commit 7c974f1 into main Aug 7, 2026
13 checks passed
@dependabot
dependabot Bot deleted the dependabot/uv/python-1e6fdbb5bf branch August 7, 2026 08:57
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