Clean up redundant CellRank calls in perturbation tutorial cells#76
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Remove unnecessary compute_macrostates() calls in perturbation loops where terminal states are set directly via cell-index dicts (ct_indices), bypassing macrostate detection entirely. Also remove redundant ConnectivityKernel recomputation inside perturbation loops and per-TF cells — connectivity is derived from expression/PCA space and is identical across all perturbed models. Fix TF_list=TF typo in zebrafish TFscreening call (loop variable vs. full TF list). Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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Remove unnecessary compute_macrostates() calls in perturbation loops where terminal states are set directly via cell-index dicts (ct_indices), bypassing macrostate detection entirely. Also remove redundant ConnectivityKernel recomputation inside perturbation loops and per-TF cells — connectivity is derived from expression/PCA space and is identical across all perturbed models. Fix TF_list=TF typo in zebrafish TFscreening call (loop variable vs. full TF list).