Iota

Iota prefilters local matches for Lambda (version 3). but could also be used on its own.

download and installation

Prerequisites (click to expand)

• CMake >= 3.5
• GCC 14 or 15 (13 might work to, not tested)
• git

Download current master branch (click to expand)

git clone https://github.com/swewagner/iota

Building (click to expand)

mkdir build
cd build
cmake ..
make

usage instructions

Before you can search, the database needs to be split into multiple bins. The file that stores all bin paths is used as input and retrieves the database information. Additionaly a query file is required.

Iota supports three different search domains: protein, nucleotide, bisulfite For a list of options, see the help pages:

iota --help
iota SUBCOMMAND --help

authorship and copyright

Iota is a free and open source software, so you can use it for any purpose, free of charge. However certain conditions apply when you (re-)distribute and/or modify Iota, please respect the license.