cannot overwrite directory - #4
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Ooh good point. But without the -T and if the directory already exists it'll just put a symlink inside that directory which won't do the right thing either. If we want to support an existing environment created by this extension before these recent changes, we'll have to detect the directory, remove it, and then symlink. Maybe something like |
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On the other hand, none if it should matter for newly-created environments... so if you remove the directory in sunbeam_output/.snakemake/conda/ an let the extension recreate it, I think it should symlink to your sunbeam environment properly either way. |
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This might become a moot issue if we switch to a separately-managed database as @scottdaniel described in #3. |
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