Export bigwig files from split fragments file with tests#1887

Merged

timoast merged 8 commits into

stuart-lab:v2from

lldelisle:set_defaults

Jun 11, 2026

Commits on Jun 11, 2026

Add ExportGroupBW to export per-group bigwig files (#1887)

committed
Rename ExportGroupBW to ExportBigwig and address review

timoast
and
claude
committed
Validate ExportBigwig normalization column and empty group set

timoast
and
claude
committed
Use true per-group cell count for ncells normalization

timoast
and
claude
committed
Use markdown formatting in ExportBigwig documentation

timoast
and
claude
committed
Default ExportBigwig outdir to the current working directory

timoast
and
claude
committed
Write ExportBigwig intermediate bed files to a temporary directory

timoast
and
claude
committed
Add ExportBigwig to NEWS and pkgdown, fix example

timoast
and
claude
committed