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Allow colon-separated positions in gwas file#97

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cklamann wants to merge 6 commits into
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cklamann/colon-sep-variant
Open

Allow colon-separated positions in gwas file#97
cklamann wants to merge 6 commits into
developfrom
cklamann/colon-sep-variant

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@cklamann

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Closes #86

  • remove unused standardizeSNP and related functions.
  • use payload.std_snp_list list rather than raw gwas file input to get snps in report_gtex_data.py, bypassing POS column, which may not be in standard notation.
  • break data fetches out of standardize_snps and replace duplicated code

@cklamann cklamann requested a review from frewmack October 28, 2025 13:18
@cklamann cklamann marked this pull request as ready for review November 18, 2025 14:14
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