Add CLI argument parsing, requirements file, and minor fixes for BranchPoseNet usability#3
Open
ScharfAl wants to merge 7 commits into
Open
Add CLI argument parsing, requirements file, and minor fixes for BranchPoseNet usability#3ScharfAl wants to merge 7 commits into
ScharfAl wants to merge 7 commits into
Conversation
removed line: "cd whorl_pose_detector" changed command line example from "python whorl_pose_detect_CLI.py --dir_root data ......" to "python whorl_pose_detect.py --dir_root data ......"
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This PR introduces several improvements aimed at making BranchPoseNet easier to run, customize, and set up in fresh environments:
Added CLI argument parsing to whorl_pose_detect.py using argparse, allowing key parameters (dir_root, my_model, alpha, min_internodal_d, tree_id_label, semantic_label) to be overridden from the command line without editing the script directly.
Preserved original inline parameter definitions with CLI overrides to keep backward compatibility and maintain original examle values.
Created a requirements.txt listing all necessary dependencies (pandas, numpy, laspy[lazrs], Pillow, scipy, matplotlib, ultralytics), making installation simpler.
Minor README corrections for folder navigation and clearer setup instructions.