Update forecast config HEAD

applications/jedi_lfric_tests/Makefile

@@ -24,12 +24,17 @@ export EXTRA_ROSE_META = jules
 export META_DIR = $(WORKING_DIR)/../rose-meta
 export ROSE_META_DIRS = $(APPS_ROOT_DIR)/rose-meta $(META_DIR)
 
+# Note - socrates_interface must come before jules_interface as there are dependencies on each other.
 export INTERNAL_DEPENDENCIES = $(CORE_ROOT_DIR)/infrastructure \
                                $(CORE_ROOT_DIR)/components/driver \
                                $(CORE_ROOT_DIR)/components/science \
                                $(CORE_ROOT_DIR)/components/inventory \
                                $(APPS_ROOT_DIR)/interfaces/jedi_lfric_interface \
                                $(CORE_ROOT_DIR)/components/lfric-xios \
+							   $(APPS_ROOT_DIR)/science/shared \
+							   $(APPS_ROOT_DIR)/interfaces/socrates_interface \
+							   $(APPS_ROOT_DIR)/interfaces/jules_interface \
+							   $(APPS_ROOT_DIR)/interfaces/physics_schemes_interface \
                                $(APPS_ROOT_DIR)/science/gungho \
                                $(APPS_ROOT_DIR)/science/linear \
                                $(APPS_ROOT_DIR)/science/adjoint
@@ -46,7 +51,7 @@ ifneq ("$(PSYCLONE_TRANSFORMATION)","none")
 endif
 
 .PHONY: default
-default: build integration-tests
+default: build
 	$(Q)echo > /dev/null
 
 .PHONY: documentation doc docs
@@ -56,7 +61,12 @@ documentation doc docs: document-uml document-latex document-api
 include $(APPS_ROOT_DIR)/build/extract/extract_meta.mk
 include $(CORE_ROOT_DIR)/infrastructure/build/lfric.mk
 include $(INTERNAL_DEPENDENCIES:=/build/import.mk)
--include $(PROJECT_DIR)/build/project.mk
+include build/project.mk
+
+# Include transmute list only if not using minimum or no transformations
+ifeq ($(filter "$(PSYCLONE_TRANSFORMATION)", "none" "minimum"),)
+  include build/psyclone_transmute_file_list.mk
+endif
 
 ##############################################################################
 # Documentation
@@ -102,13 +112,13 @@ build: export BIN_DIR     ?= $(PROJECT_DIR)/bin
 build: export LIB_DIR     ?= $(PROJECT_DIR)/lib
 build: export MOD_DIR     ?= $(PROJECT_DIR)/mod
 build: export CXX_LINK     = TRUE
-build: export PROGRAMS    := $(basename $(notdir $(shell find source -maxdepth 1 -name '*.[Ff]90' -print)))
+build: export PROGRAMS    := $(basename $(notdir $(shell find source -maxdepth 1 -name '*.[Ff]90' -exec egrep -l "^\s*program" {} \;)))
 build: export PROJECT      = $(PROJECT_NAME)
 build: export WORKING_DIR := $(WORKING_DIR)/jedi_lfric_tests
 
 build: export LDFLAGS_GROUPS = OPENMP
 ifeq "$(PROFILE)" "full-debug"
-build: export FFLAG_GROUPS = OPENMP DEBUG WARNINGS INIT RUNTIME NO_OPTIMISATION FORTRAN_STANDARD
+build: export FFLAG_GROUPS = OPENMP DEBUG WARNINGS INIT RUNTIME NO_OPTIMISATION
 else ifeq "$(PROFILE)" "fast-debug"
 build: export FFLAG_GROUPS = OPENMP DEBUG WARNINGS SAFE_OPTIMISATION FORTRAN_STANDARD
 else ifeq "$(PROFILE)" "production"
@@ -123,6 +133,20 @@ build: ALWAYS
 	$(Q)for SUBPROJECT in $(INTERNAL_DEPENDENCIES) ; do \
 	    $(MAKE) $(QUIET_ARG) -f $$SUBPROJECT/build/import.mk ; done
 	$(call MESSAGE,========================================)
+	$(call MESSAGE,Extracting coupled_interface component)
+	$(call MESSAGE,========================================)
+	$Q$(MAKE) $(QUIET_ARG) -f $(LFRIC_BUILD)/extract.mk \
+	          SOURCE_DIR=$(APPS_ROOT_DIR)/interfaces/coupled_interface/source
+	$(call MESSAGE,========================================)
+	$(call MESSAGE,Extracting Gungho dynamical core)
+	$(call MESSAGE,========================================)
+	$Q$(MAKE) $(QUIET_ARG) -f $(LFRIC_BUILD)/extract.mk \
+	          SOURCE_DIR=$(APPS_ROOT_DIR)/science/gungho/source
+	$(call MESSAGE,========================================)
+	$(call MESSAGE,Extracting UM physics)
+	$(call MESSAGE,========================================)
+	$Q$(MAKE) $(QUIET_ARG) -f $(APPS_ROOT_DIR)/build/extract/extract_physics.mk
+	$(call MESSAGE,========================================)
 	$(call MESSAGE,Extracting $(PROJECT_NAME))
 	$(call MESSAGE,========================================)
 	$Q$(MAKE) $(QUIET_ARG) -f $(LFRIC_BUILD)/extract.mk \
@@ -136,16 +160,54 @@ build: ALWAYS
 	$(call MESSAGE,Generating $(PROJECT) namelist loaders)
 	$(call MESSAGE,=========================================================)
 	$Q$(MAKE) $(QUIET_ARG) -f $(LFRIC_BUILD)/configuration.mk \
-	          PROJECT=$(PROJECT) \
-	          SOURCE_DIR=source \
-	          WORKING_DIR=$(WORKING_DIR) \
+	          SOURCE_DIR=$(APPS_ROOT_DIR)/science/gungho/source \
 	          META_FILE_DIR=$(META_FILE_DIR)
 	$(call MESSAGE,========================================)
+	$(call MESSAGE,PSycloning interface components)
+	$(call MESSAGE,========================================)
+	$Q$(MAKE) $(QUIET_ARG) -f $(LFRIC_BUILD)/psyclone/psyclone_psykal.mk \
+	          SOURCE_DIR=$(APPS_ROOT_DIR)/interfaces/coupled_interface/source \
+	          OPTIMISATION_PATH=$(OPTIMISATION_PATH)
+	$Q$(MAKE) $(QUIET_ARG) -f $(LFRIC_BUILD)/psyclone/psyclone_psykal.mk \
+	          SOURCE_DIR=$(APPS_ROOT_DIR)/interfaces/jules_interface/source \
+	          OPTIMISATION_PATH=$(OPTIMISATION_PATH)
+	$Q$(MAKE) $(QUIET_ARG) -f $(LFRIC_BUILD)/psyclone/psyclone_psykal.mk \
+	          SOURCE_DIR=$(APPS_ROOT_DIR)/interfaces/socrates_interface/source \
+	          OPTIMISATION_PATH=$(OPTIMISATION_PATH)
+	$Q$(MAKE) $(QUIET_ARG) -f $(LFRIC_BUILD)/psyclone/psyclone_psykal.mk \
+	          SOURCE_DIR=$(APPS_ROOT_DIR)/interfaces/physics_schemes_interface/source \
+	          OPTIMISATION_PATH=$(OPTIMISATION_PATH)
+	$(call MESSAGE,========================================)
+	$(call MESSAGE,PSycloning Gungho dynamical core)
+	$(call MESSAGE,========================================)
+	$Q$(MAKE) $(QUIET_ARG) -f $(LFRIC_BUILD)/psyclone/psyclone_psykal.mk \
+	          SOURCE_DIR=$(APPS_ROOT_DIR)/science/gungho/source \
+	          OPTIMISATION_PATH=$(OPTIMISATION_PATH)
+	$(call MESSAGE,========================================)
 	$(call MESSAGE,PSycloning $(PROJECT_NAME))
 	$(call MESSAGE,========================================)
 	$Q$(MAKE) $(QUIET_ARG) -f $(LFRIC_BUILD)/psyclone/psyclone_psykal.mk \
 	          SOURCE_DIR=source \
 	          OPTIMISATION_PATH=$(OPTIMISATION_PATH)
+	$(call MESSAGE,========================================)
+	$(call MESSAGE,Preprocess and PSyclone Transmute)
+	$(call MESSAGE,========================================)
+	$Q$(MAKE) $(QUIET_ARG) -f $(APPS_ROOT_DIR)/interfaces/build/pre_process_phys.mk \
+              SOURCE_DIR=$(WORKING_DIR) \
+              PSYCLONE_PHYSICS_FILES="$(PSYCLONE_PHYSICS_FILES)" \
+	          PSYCLONE_DIRECTORIES="$(PSYCLONE_DIRECTORIES)" \
+	          PSYCLONE_PHYSICS_EXCEPTION="$(PSYCLONE_PHYSICS_EXCEPTION)"
+	$Q$(MAKE) $(QUIET_ARG) -f $(APPS_ROOT_DIR)/interfaces/build/psyclone_transmute_pass.mk \
+	          SOURCE_DIR=$(WORKING_DIR) \
+	          OPTIMISATION_PATH_PSY=$(APPS_ROOT_DIR)/applications/$(PROJECT)/$(OPTIMISATION_PATH) \
+	          PSYCLONE_PASS_NO_SCRIPT="$(PSYCLONE_PASS_NO_SCRIPT)"
+	$Q$(MAKE) $(QUIET_ARG) -f $(APPS_ROOT_DIR)/interfaces/build/psyclone_transmute.mk \
+	          SOURCE_DIR=$(WORKING_DIR) \
+	          OPTIMISATION_PATH_PSY=$(APPS_ROOT_DIR)/applications/$(PROJECT)/$(OPTIMISATION_PATH) \
+	          PSYCLONE_PHYSICS_FILES="$(PSYCLONE_PHYSICS_FILES)" \
+	          PSYCLONE_PASS_NO_SCRIPT="$(PSYCLONE_PASS_NO_SCRIPT)" \
+	          PSYCLONE_DIRECTORIES="$(PSYCLONE_DIRECTORIES)" \
+	          PSYCLONE_PHYSICS_EXCEPTION="$(PSYCLONE_PHYSICS_EXCEPTION)"
 	$(call MESSAGE,=========================================================)
 	$(call MESSAGE,Analysing $(PROJECT) build dependencies)
 	$(call MESSAGE,=========================================================)
@@ -190,24 +252,8 @@ unit-tests/build: extract_meta unit-tests/build
 ##############################################################################
 # Integration tests
 #
-integration-tests/%: export BIN_DIR      ?= $(PROJECT_DIR)/test
-integration-tests/%: export FFLAGS       += -DINT_TEST
-integration-tests/%: export IMPORT_PARTS  = $(CORE_ROOT_DIR)/infrastructure \
-                                            $(CORE_ROOT_DIR)/components/science \
-                                            $(CORE_ROOT_DIR)/components/driver \
-                                            $(CORE_ROOT_DIR)/components/inventory \
-                                            $(CORE_ROOT_DIR)/components/lfric-xios \
-                                            $(APPS_ROOT_DIR)/interfaces/jedi_lfric_interface \
-                                            $(APPS_ROOT_DIR)/science/gungho \
-                                            $(APPS_ROOT_DIR)/science/linear \
-                                            $(APPS_ROOT_DIR)/science/adjoint
-integration-tests/%: export META_FILE_DIR = rose-meta/jedi_lfric_tests/HEAD
-integration-tests/%: export PROJECT       = $(PROJECT_NAME)
-integration-tests/%: export SOURCE_DIR    = source
-integration-tests/%: export TEST_DIR      = integration-test
-integration-tests/%: export WORKING_DIR  := $(WORKING_DIR)/integration-tests
-integration-tests: extract_meta integration-tests/run
-integration-tests/build: extract_meta integration-tests/build
+integration-tests:
+	$(call MESSAGE,Testing,"There are no integration tests.")
 
 ##############################################################################
 # Clean

applications/jedi_lfric_tests/build/compile_options.mk

@@ -0,0 +1,46 @@
+##############################################################################
+# (c) Crown copyright 2026 Met Office. All rights reserved.
+# The file LICENCE, distributed with this code, contains details of the terms
+# under which the code may be used.
+##############################################################################
+
+# NOTE: Import of compile options from LFRic infrastructure is temporarily
+# suspended here as a workaround for #2340 in which application of the
+# -qoverride-limits option was preventing compilation of a UKCA module.
+# include $(LFRIC_BUILD)/compile_options.mk
+
+$(info UM physics specific compile options)
+
+include $(PROJECT_DIR)/build/fortran/$(FORTRAN_COMPILER).mk
+
+casim/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+ukca/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+jules/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+socrates/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+legacy/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+AC_assimilation/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+aerosols/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+atmosphere_service/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+boundary_layer/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+carbon/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+convection/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+diffusion_and_filtering/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+dynamics/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+dynamics_advection/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+electric/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+free_tracers/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+gravity_wave_drag/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+idealised/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+large_scale_cloud/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+large_scale_precipitation/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+physics_diagnostics/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+PWS_diagnostics/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+radiation_control/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+stochastic_physics/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+tracer_advection/%.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS)
+%/limited_area_constants_mod.o: private FFLAGS_EXTRA = $(FFLAGS_INTEL_FIX_ARG)
+
+$(info Disable warnings-turned-error caused by undeclared external functions - see ifort.mk)
+%mpi_mod.o: private FFLAGS_EXTRA = $(FFLAGS_INTEL_EXTERNALS)
+socrates/src/radiance_core/%.o: private FFLAGS_EXTRA = $(FFLAGS_INTEL_EXTERNALS)
+socrates/src/interface_core/%.o: private FFLAGS_EXTRA = $(FFLAGS_INTEL_EXTERNALS)

applications/jedi_lfric_tests/build/fortran/crayftn.mk

@@ -0,0 +1,13 @@
+##############################################################################
+# (c) Crown copyright 2026 Met Office. All rights reserved.
+# The file LICENCE, distributed with this code, contains details of the terms
+# under which the code may be used.
+##############################################################################
+# Various things specific to the Cray Fortran compiler.
+##############################################################################
+
+$(info Project specials for Cray compiler)
+
+export FFLAGS_UM_PHYSICS = -s real64
+
+include $(PROJECT_DIR)/build/fortran/crayftn/$(PROFILE).mk

applications/jedi_lfric_tests/build/fortran/crayftn/fast-debug.mk

@@ -0,0 +1,55 @@
+##############################################################################
+# (c) Crown copyright 2026 Met Office. All rights reserved.
+# The file LICENCE, distributed with this code, contains details of the terms
+# under which the code may be used.
+##############################################################################
+##############################################################################
+# Various things specific to fast-debug lfric_atm when using the
+# Cray Fortran compiler.
+# To override flags specified in LFRic Core, use
+# FFLAGS_SAFE_OPTIMISATION, to add an additional flag to what is specified
+# in Core, use FFLAGS_EXTRA. If you need to add debugging flags to a module,
+# modify FFLAGS_DEBUG for the target module.
+# All flag modification should be `private` so they are not inherited by
+# submodules.
+##############################################################################
+
+# ==========================================================================
+# NON-DEBUG FLAGS
+# ==========================================================================
+# UKCA
+%ukca_emiss_mode_mod.o: private FFLAGS_SAFE_OPTIMISATION = -O0
+%ukca_step_control_mod.o: private FFLAGS_SAFE_OPTIMISATION = -O0
+
+# UM
+%parcel_ascent_5a.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS) -hvector0
+
+# LFRic Apps
+%aerosol_ukca_alg_mod_psy.o: private FFLAGS_SAFE_OPTIMISATION = -O0
+%bl_exp_alg_mod_psy.o: private FFLAGS_SAFE_OPTIMISATION = -O0
+%bl_imp_alg_mod_psy.o: private FFLAGS_SAFE_OPTIMISATION = -O0
+%conv_comorph_alg_mod_psy.o: private FFLAGS_SAFE_OPTIMISATION = -O0
+%conv_comorph_kernel_mod.o: private FFLAGS_SAFE_OPTIMISATION = -O0
+%conv_gr_alg_mod_psy.o: private FFLAGS_SAFE_OPTIMISATION = -O0
+%gungho_model_mod.o: private FFLAGS_SAFE_OPTIMISATION = -O0
+%init_aerosol_fields_alg_mod_psy.o: private FFLAGS_SAFE_OPTIMISATION = -O0
+%jules_extra_kernel_mod.o: private FFLAGS_SAFE_OPTIMISATION = -O0
+large_scale_precipitation/%.o: private FFLAGS_SAFE_OPTIMISATION = -O2 -hfp0 -hflex_mp=strict
+
+# ==========================================================================
+# DEBUG FLAGS
+# ==========================================================================
+# UKCA
+%ukca_emiss_mode_mod.o: private FFLAGS_DEBUG = -G0
+%ukca_step_control_mod.o: private FFLAGS_DEBUG = -G0
+
+# LFRic Apps
+%aerosol_ukca_alg_mod_psy.o: private FFLAGS_DEBUG = -G0
+%bl_exp_alg_mod_psy.o: private FFLAGS_DEBUG = -G0
+%bl_imp_alg_mod_psy.o: private FFLAGS_DEBUG = -G0
+%conv_comorph_alg_mod_psy.o: private FFLAGS_DEBUG = -G0
+%conv_comorph_kernel_mod.o: private FFLAGS_DEBUG = -G0
+%conv_gr_alg_mod_psy.o: private FFLAGS_DEBUG = -G0
+%gungho_model_mod.o: private FFLAGS_DEBUG = -G0
+%init_aerosol_fields_alg_mod_psy.o: private FFLAGS_DEBUG = -G0
+%jules_extra_kernel_mod.o: private FFLAGS_DEBUG = -G0

applications/jedi_lfric_tests/build/fortran/crayftn/full-debug.mk

@@ -0,0 +1,17 @@
+##############################################################################
+# (c) Crown copyright 2026 Met Office. All rights reserved.
+# The file LICENCE, distributed with this code, contains details of the terms
+# under which the code may be used.
+##############################################################################
+##############################################################################
+# Various things specific to full-debug lfric_atm when using the
+# Cray Fortran compiler.
+##############################################################################
+
+# ==========================================================================
+# NON-DEBUG FLAGS
+# ==========================================================================
+
+# ==========================================================================
+# DEBUG FLAGS
+# ==========================================================================

applications/jedi_lfric_tests/build/fortran/crayftn/production.mk

@@ -0,0 +1,36 @@
+##############################################################################
+# (c) Crown copyright 2026 Met Office. All rights reserved.
+# The file LICENCE, distributed with this code, contains details of the terms
+# under which the code may be used.
+##############################################################################
+##############################################################################
+# Various things specific to production lfric_atm when using the
+# Cray Fortran compiler.
+##############################################################################
+
+# ==========================================================================
+# DIRECTORIES
+# ==========================================================================
+gravity_wave_drag/%.o: private FFLAGS_RISKY_OPTIMISATION = -O2 -hflex_mp=strict
+
+# ==========================================================================
+# MODULES
+# ==========================================================================
+# UKCA
+%ukca_emiss_mode_mod.o: private FFLAGS_RISKY_OPTIMISATION = -O0
+%ukca_step_control_mod.o: private FFLAGS_RISKY_OPTIMISATION = -O0
+
+# UM
+%parcel_ascent_5a.o: private FFLAGS_EXTRA = $(FFLAGS_UM_PHYSICS) -hvector0
+
+# LFRic Apps
+%aerosol_ukca_alg_mod_psy.o: private FFLAGS_RISKY_OPTIMISATION = -O0
+%bl_exp_alg_mod_psy.o: private FFLAGS_RISKY_OPTIMISATION = -O0
+%bl_imp_alg_mod_psy.o: private FFLAGS_RISKY_OPTIMISATION = -O0
+%conv_comorph_alg_mod_psy.o: private FFLAGS_RISKY_OPTIMISATION = -O0
+%conv_comorph_kernel_mod.o: private FFLAGS_RISKY_OPTIMISATION = -O0
+%conv_gr_alg_mod_psy.o: private FFLAGS_RISKY_OPTIMISATION = -O0
+%gungho_model_mod.o: private FFLAGS_RISKY_OPTIMISATION = -O0
+%init_aerosol_fields_alg_mod_psy.o: private FFLAGS_RISKY_OPTIMISATION = -O0
+%jules_extra_kernel_mod.o: private FFLAGS_RISKY_OPTIMISATION = -O0
+large_scale_precipitation/%.o: private FFLAGS_SAFE_OPTIMISATION = -O3 -hipa3 -hflex_mp=conservative