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raxmlp

Status: Open.

#73 In smirarab/pasta;

· kahato0926 opened on May 28, 2025

"Error in rule pasta" when aligning paralogous gene sequences

Status: Open.

#71 In smirarab/pasta;

· finn314 opened on Oct 24, 2024

The alignment file has no sequences. PASTA quits.

Status: Open.

#69 In smirarab/pasta;

· TanHoa-DinhNguyen opened on Jun 3, 2024

Tree parse error: unexpected token '_os_78_oe_ropschr02g03077' -- not recognized as a sequence name

Status: Open.

#68 In smirarab/pasta;

· erya-song opened on Mar 25, 2024

Failed to run hmmeralign

Status: Open.

#63 In smirarab/pasta;

· marinamashintsova opened on Feb 21, 2023

Continue crashed analysis from tree inference step

Status: Open.

#61 In smirarab/pasta;

· diegomarquezp opened on Aug 9, 2021

TreeShrink error

Status: Open.

#50 In smirarab/pasta;

· sjfleck opened on Apr 26, 2020

Pasta fails with homologs and muscle -> no sequences

Status: Open.

#48 In smirarab/pasta;

· hhg7 opened on Apr 8, 2020

Better describe the --treeshrink-filter option

Status: Open.

#41 In smirarab/pasta;

· smirarab opened on Jul 17, 2019

Bioconductor install doesn't work

Status: Open.

#40 In smirarab/pasta;

· brendanf opened on Mar 4, 2019

Issues in setup.py

Status: Open.

#30 In smirarab/pasta;

· niemasd opened on Apr 15, 2018

init_aln is not registered as a temporary directory that was created by this process

Status: Open.

#27 In smirarab/pasta;

· jpearl01 opened on Mar 28, 2018