run tests against dev version of jasmine core

.github/workflows/SimPathsBuild.yml

@@ -17,10 +17,10 @@ jobs:
     runs-on: [ ubuntu-latest ]
     steps:
     - uses: actions/checkout@v6
-    - name: Set up JDK 19
+    - name: Set up JDK
       uses: actions/setup-java@v5
       with:
-        java-version: '19'
+        java-version: '25'
         distribution: 'temurin'
     - name: Build with Maven
       run: mvn -B package --file pom.xml
@@ -33,10 +33,10 @@ jobs:
     runs-on: [ ubuntu-latest ]
     steps:
     - uses: actions/checkout@v6
-    - name: Set up JDK 19
+    - name: Set up JDK
       uses: actions/setup-java@v5
       with:
-        java-version: '19'
+        java-version: '25'
         distribution: 'temurin'
     - name: Run integration tests
       run: mvn verify
@@ -52,10 +52,10 @@ jobs:
     runs-on: [ ubuntu-latest ]
     steps:
       - uses: actions/checkout@v6
-      - name: Set up JDK 19
+      - name: Set up JDK
         uses: actions/setup-java@v5
         with:
-          java-version: '19'
+          java-version: '25'
           distribution: 'temurin'
       - uses: actions/download-artifact@v8
         with:
@@ -74,10 +74,10 @@ jobs:
     runs-on: [ ubuntu-latest ]
     steps:
     - uses: actions/checkout@v6
-    - name: Set up JDK 19
+    - name: Set up JDK
       uses: actions/setup-java@v5
       with:
-        java-version: '19'
+        java-version: '25'
         distribution: 'temurin'
     - uses: actions/download-artifact@v8
       with:
@@ -98,10 +98,10 @@ jobs:
     runs-on: [ ubuntu-latest ]
     steps:
     - uses: actions/checkout@v6
-    - name: Set up JDK 19
+    - name: Set up JDK
       uses: actions/setup-java@v5
       with:
-        java-version: '19'
+        java-version: '25'
         distribution: 'temurin'
     - uses: actions/download-artifact@v8
       with:

.github/workflows/publish-javadoc.yml

@@ -17,10 +17,10 @@ jobs:
       - name: Checkout repository
         uses: actions/checkout@v6
 
-      - name: Set up JDK 19
+      - name: Set up JDK
         uses: actions/setup-java@v5
         with:
-          java-version: '19'
+          java-version: '25'
           distribution: 'temurin'
           cache: maven
 
@@ -36,7 +36,7 @@ jobs:
         with:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           javadoc-branch: javadoc
-          java-version: 19
+          java-version: 25
           target-folder: javadoc
           project: maven
 

documentation/wiki/developer-guide/internals/api.md

@@ -16,59 +16,7 @@ To update the API documentation, add or modify Javadoc comments in the source co
 
 [The workflow](https://github.com/simpaths/SimPaths/blob/develop/.github/workflows/publish-javadoc.yml) automates the generation and publishing of HTML documentation from Javadoc comments whenever changes are pushed to the `develop` branch.
 
-```
-on:
-  push:
-    branches:
-      - develop  # Only publish when pushing to develop branch
-```
-
-The code is checked out from the `develop` branch, Java 19 is installed, and SimPaths is compiled.
-
-
-```
-jobs:
-  publish-javadoc:
-    runs-on: ubuntu-latest
-    permissions:
-      contents: write  # Needed to push to the javadoc branch
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v3
-
-      - name: Set up JDK 19
-        uses: actions/setup-java@v3
-        with:
-          java-version: '19'
-          distribution: 'temurin'
-          cache: maven
-
-      - name: Build (optional if Javadoc needs compiled sources)
-        run: mvn -B compile --file pom.xml
-```
-
-The documentation is then generated from the Javadoc comments in the code.
-
-
-```
-- name: Generate Javadoc
-        run: mvn javadoc:javadoc --file pom.xml
-```
-
-Finally, the generated documentation is deployed to the `javadoc` branch of the SimPaths repository.
-
-
-```
-- name: Deploy Javadoc to branch
-        uses: MathieuSoysal/Javadoc-publisher.yml@v3.0.2
-        with:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-          javadoc-branch: javadoc
-          java-version: 19
-          target-folder: javadoc # Specifies the folder in which the documentation is saved 
-          project: maven
-```
+The generated documentation is deployed to the `javadoc` branch of the SimPaths repository.
 
 The published documentation is hosted using [GitHub Pages](https://docs.github.com/en/pages/getting-started-with-github-pages/configuring-a-publishing-source-for-your-github-pages-site). GitHub Pages is a service that hosts static websites directly from a GitHub repository.
 

documentation/wiki/developer-guide/internals/multirun-implementation.md

@@ -8,8 +8,7 @@
 
 ### Prerequisites
 
-- Java 19
-- Maven 3.8+
+- a [working environment](../../getting-started/environment-setup.md)
 - Optional IDE: IntelliJ IDEA (import as a Maven project)
 
 ### Build and run
@@ -139,4 +138,4 @@ In our open-source project, we follow a clear and consistent branch naming conve
     - `docs/documentation-topic`: Prefix documentation branches with `docs` for updating or creating documentation. For example, `docs/update-readme`.
 
 These branch naming conventions are designed to make it easy for our contributors to understand the purpose of each branch and maintain consistency within our repository. Please adhere to these conventions when creating branches for your contributions.
--->
+-->

documentation/wiki/developer-guide/working-in-github.md

@@ -5,8 +5,8 @@
 In this page, the various steps that are necessary to make changes to SimPaths and for them to be correctly implemented in the code and committed via GitHub (_i.e._, made available to other users) are explained.
 
 **Requirements**
+- a [working environment](../getting-started/environment-setup.md)
 - GitHub account
-- Java Development Kit (JDK)
 - IDE (Integrated Development Environment)
 
 In the following sections, explanatory screenshots are presented from both the GitHub browser and GitHub Desktop. While the latter is not required, GitHub Desktop provides a very user-friendly graphical user interface (GUI). It clearly visualises commits, branches, changes, and merge conflicts, and it is ideal for beginners or those who prefer not to use the command line. Additionally, it is designed for a quick setup and a seamless GitHub account integration. Thus, for the sake of contributing to SimPaths development, GitHub Desktop is a complete tool. However, it is not necessary; the user can entirely operate with the browser version in combination with the IDE or any other Git-integrated tool, _e.g._, GitKraken (GUI) or Git CLI (Command Line).

documentation/wiki/getting-started/environment-setup.md

@@ -6,8 +6,8 @@
 
 ## Requirements
 
-- Java Development Kit (JDK) 19 (the project targets Java 19 — earlier versions will not compile)
-- Apache Maven 3.8 or later
+- Java Development Kit (JDK) 25 or later
+- Apache Maven 3.9.16 or later
 - Git
 
 ## Cloning the repository

documentation/wiki/getting-started/index.md

@@ -2,15 +2,8 @@
 
 This section walks you through everything needed to run SimPaths for the first time.
 
-## Prerequisites
-
-SimPaths is a Java project. Before running simulations you need:
-
-- Java Development Kit (JDK) 19 or later
-- Maven (for dependency management)
-- The required input data files (see [Input Data](data/index.md))
-
-## Steps
+SimPaths is a Java project. Follow these steps to setup a working environment
+and run simulations:
 
 1. [Environment Setup](environment-setup.md) — install dependencies and clone the repository
 2. [Input Data](data/index.md) — obtain the required UK input datasets

pom.xml

@@ -4,23 +4,20 @@
 	<artifactId>model</artifactId>
 	<version>1.0.0</version>
     <properties>
+        <maven.compiler.release>25</maven.compiler.release>
         <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
     </properties>
 	<build>
 		<sourceDirectory>src/main/java</sourceDirectory>
 		<plugins>
 			<plugin>
 				<artifactId>maven-compiler-plugin</artifactId>
-				<version>3.10.1</version>
-				<configuration>
-					<source>19</source>
-					<target>19</target>
-				</configuration>
+				<version>3.15.0</version>
 			</plugin>
 			<plugin>
 				<groupId>org.apache.maven.plugins</groupId>
 				<artifactId>maven-surefire-plugin</artifactId>
-				<version>3.2.2</version>
+				<version>3.5.6</version>
 				<configuration>
 					<excludes>
 						<exclude>**/*IntegrationTest.java</exclude>
@@ -30,7 +27,7 @@
 			<plugin>
 				<groupId>org.apache.maven.plugins</groupId>
 				<artifactId>maven-failsafe-plugin</artifactId>
-				<version>3.5.2</version>
+				<version>3.5.6</version>
 				<configuration>
 					<includes>
 						<include>**/*IntegrationTest.java</include>
@@ -48,7 +45,7 @@
 			<plugin>
 				<groupId>org.apache.maven.plugins</groupId>
 				<artifactId>maven-shade-plugin</artifactId>
-				<version>3.5.1</version>
+				<version>3.6.2</version>
 				<executions>
 					<execution>
 						<id>build-single</id>
@@ -108,27 +105,25 @@
         </plugins>
 	</build>
 	<dependencies>
-	    <!-- https://mvnrepository.com/artifact/org.apache.commons/commons-math3 -->
 		<dependency>
 		    <groupId>org.apache.commons</groupId>
 		    <artifactId>commons-math3</artifactId>
 		    <version>3.6.1</version>
 		</dependency>
-		<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-lang3 -->
 		<dependency>
 			<groupId>commons-cli</groupId>
 			<artifactId>commons-cli</artifactId>
-			<version>1.4</version> <!-- Use the latest version available -->
+			<version>1.11.0</version>
 		</dependency>
 		<dependency>
 			<groupId>org.yaml</groupId>
 			<artifactId>snakeyaml</artifactId>
-			<version>1.29</version> <!-- Use the latest version available -->
+			<version>2.6</version>
 		</dependency>
 		<dependency>
 			<groupId>com.github.jasmineRepo</groupId>
 			<artifactId>JAS-mine-core</artifactId>
-			<version>4.3.25</version>
+            <version>d179a02f8e5c2c00009ec812a09e383f5a5285c4</version> <!--JASMINE-->
 			<scope>compile</scope>
 		</dependency>
 		<dependency>
@@ -148,7 +143,6 @@
 			<artifactId>xml-apis</artifactId>
 			<version>1.4.01</version>
 		</dependency>
-		<!-- https://mvnrepository.com/artifact/com.miglayout/miglayout -->
 		<dependency>
 		    <groupId>com.miglayout</groupId>
 		    <artifactId>miglayout</artifactId>
@@ -157,52 +151,52 @@
         <dependency>
             <groupId>org.jetbrains</groupId>
             <artifactId>annotations</artifactId>
-            <version>24.1.0</version>
+            <version>26.1.0</version>
             <scope>compile</scope>
         </dependency>
         <dependency>
             <groupId>org.junit.jupiter</groupId>
             <artifactId>junit-jupiter</artifactId>
-            <version>5.10.1</version>
+            <version>6.1.0</version>
             <scope>test</scope>
         </dependency>
 		<dependency>
 			<groupId>org.apache.commons</groupId>
 			<artifactId>commons-csv</artifactId>
-			<version>1.10.0</version>
+			<version>1.14.1</version>
 		</dependency>
 		<dependency>
 			<groupId>com.opencsv</groupId>
 			<artifactId>opencsv</artifactId>
-			<version>5.9</version>
+			<version>5.12.0</version>
 		</dependency>
 		<dependency>
 			<groupId>org.apache.logging.log4j</groupId>
 			<artifactId>log4j-api</artifactId>
-			<version>2.17.1</version>
+			<version>2.26.0</version>
 		</dependency>
 		<dependency>
 			<groupId>org.apache.logging.log4j</groupId>
 			<artifactId>log4j-core</artifactId>
-			<version>2.17.1</version>
+			<version>2.26.0</version>
 		</dependency>
         <dependency>
             <groupId>org.mockito</groupId>
             <artifactId>mockito-core</artifactId>
-            <version>5.10.0</version>
+            <version>5.23.0</version>
             <scope>test</scope>
         </dependency>
         <!-- Mockito JUnit 5 Integration (Required for @Mock and extensions) -->
         <dependency>
             <groupId>org.mockito</groupId>
             <artifactId>mockito-junit-jupiter</artifactId>
-            <version>5.10.0</version>
+            <version>5.23.0</version>
             <scope>test</scope>
         </dependency>
         <dependency>
             <groupId>net.bytebuddy</groupId>
             <artifactId>byte-buddy</artifactId>
-            <version>1.17.8</version> <!-- Latest available -->
+            <version>1.18.10</version>
         </dependency>
 	</dependencies>
 	<repositories>

src/main/java/simpaths/experiment/SimPathsCollector.java

@@ -17,7 +17,8 @@
 import microsim.statistics.functions.*;
 // import plug-in packages
 import org.apache.commons.math3.util.Pair;
-import org.apache.log4j.Logger;
+import org.apache.logging.log4j.LogManager;
+import org.apache.logging.log4j.Logger;
 
 // import JAS-mine packages
 import microsim.annotation.GUIparameter;
@@ -48,7 +49,7 @@
 public class SimPathsCollector extends AbstractSimulationCollectorManager implements EventListener {
 
     // default simulation parameters
-    private static Logger log = Logger.getLogger(SimPathsCollector.class);
+    private static Logger log = LogManager.getLogger(SimPathsCollector.class);
 
     @GUIparameter(description="Calculate the Gini coefficients of income (also displayed in charts)")
     private boolean calculateGiniCoefficients = false;