Skip to content

fix: switch to R.utils::gunzip over removed GEOquery::gunzip - #1

Open
sof202 wants to merge 2 commits into
schalkwyk:masterfrom
sof202:use-Rutils-gunzip
Open

fix: switch to R.utils::gunzip over removed GEOquery::gunzip#1
sof202 wants to merge 2 commits into
schalkwyk:masterfrom
sof202:use-Rutils-gunzip

Conversation

@sof202

@sof202 sof202 commented Jun 4, 2026

Copy link
Copy Markdown

Description

This finishes what was started in commit 0fed606.

This is also the 'proper' solution to #17.

I have also bumped the version to 1.31.4 as a result of this change.

@sof202

sof202 commented Jun 4, 2026

Copy link
Copy Markdown
Author

For further clarification, the original GEOquery::gunzip function was taken from R.utils and was done purely to get around a problem with bioconductor. This problem was fixed several years ago, hence the deprecation and eventual removal of gunzip from the GEOquery package.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant