iseograph-eval

Evaluation methods for proteoform graph of IseoGraph used in Sarah Vogels' bachelor's thesis. The tool IseoGraph can be found at https://github.com/sarahvgls/iseograph.

Generate artificial proteins

Run

python generate_graphml_files.py

Generate plots

Make sure the performance_data.csvfiles for the different methods are in the performance_tracks's subfolders. Check the paths in generate_plots.py. Then run

python generate_plots.py

Plots will be saved to plots folder.

Testing

Navigate to frontend-tests. Run the performance test via

 npx tsx performance-test.ts

To enable debugging, run

 PWDEBUG=1 npx tsx performance-test.ts