BioRAG - 3-Way Biomedical RAG Comparison

A complete RAG system for biomedical literature that compares three answering approaches side-by-side.

Features

• Downloads papers from PubMed Central
• Semantic search with sentence-transformers
• 3-way output comparison: Raw Retrieval | Standard LLM | Few-shot LLM

How to Run

1. Open in Colab
2. Add your Groq API key
3. Run all cells

Sample Output

• Raw Retrieval: Shows similarity scores (0.534, 0.291, 0.289)
• Standard LLM: Direct mutation list
• Few-shot LLM: Structured answer with percentages (EGFR 61.5%, KRAS 8.2%, etc.)