Install GFA from GitHub
devtools::install_github("jean997/GFA")
or to install with vignette
devtools::install_github("jean997/GFA", build_vignettes = TRUE)
browseVignettes("GFA")
We have written a Snakemake pipeline that implements all of the steps of a GFA analysis and requires only input of configuration parameters and a spreadsheet of data files. This pipeline can be found at https://github.com/jean997/gfa_pipeline