All issues

Search results

amplicon: build the viz for non-ribosomal runs, without taxonomy

Status: Open.

#51 In rec3141/danaSeq;

· rec3141 opened on Aug 14, 2026

Add optional aggregation by biosample

enhancementNew feature or requestNew feature or request

Status: Open.

#36 In rec3141/danaSeq;

· rec3141 opened on Aug 8, 2026

Add metadata explorer

enhancementNew feature or requestNew feature or request

Status: Open.

#35 In rec3141/danaSeq;

· rec3141 opened on Aug 8, 2026

truncLen == read length discards 100% of reads, and the run still exits 0 (98,968,726 reads in, 0 out)

Status: Open.

#34 In rec3141/danaSeq;

· rec3141 opened on Aug 4, 2026

Backbone stages succeed on an empty table: 6 stages reported ✔ on zero reads

Status: Open.

#33 In rec3141/danaSeq;

· rec3141 opened on Aug 4, 2026

Emit the actual tool versions and the pipeline's own commit into results

Status: Open.

#26 In rec3141/danaSeq;

· rec3141 opened on Jul 31, 2026

Learn error models per sequencing run, not per sample — the run ID is recoverable from SRA headers

Status: Open.

#32 In rec3141/danaSeq;

· rec3141 opened on Jul 25, 2026

AUTO_TRIM can truncate reads to ~30bp (no min-length floor) → silent 100% merge failure

Status: Open.

#31 In rec3141/danaSeq;

· rec3141 opened on Jul 23, 2026

errorStrategy 'ignore' silently starves downstream steps (collect() truncation + skipped BUILD_VIZ)

Status: Open.

#30 In rec3141/danaSeq;

· rec3141 opened on Jul 23, 2026

Replace brute-force DETECT_PRIMERS with a subsample-based detector (port from OMC)

enhancementNew feature or requestNew feature or request

Status: Open.

#29 In rec3141/danaSeq;

· rec3141 opened on Jul 23, 2026

Viz: taxonomy drill-down broken; 404s for .gz variants and tree.nwk

bugSomething isn't workingSomething isn't working

Status: Open.

#28 In rec3141/danaSeq;

· rec3141 opened on Jul 22, 2026

Refactor process directives to closure form for Nextflow 26.x

Status: Open.

#23 In rec3141/danaSeq;

· rec3141 opened on May 20, 2026