Create a template for the multispecies tutorial#7
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MultiSpecies.md (full rewrite):
- Explains the new multi-graph structure (gpml-taxonomy-extra,
pathways, ncbitaxon) required for species queries
- 5 working example queries: list species, count pathways per species,
pathways by species name, proteins by taxon ID, species in a pathway
- Documents 6 unresolvable taxa / 54 affected nodes (0.2% of 25,141
annotated DataNodes); explains deprecated taxon and OBO scope issues
- Retains the UniProt federation approach as a secondary alternative
with BIND(IRI(REPLACE(...))) pattern for IRI conversion
- All queries verified against local Virtuoso
3.GeneClusterLinks.md / 4.FederatedQueries.md:
Replace 13 occurrences of outdated graph URI:
FROM <http://plantmetwiki.bioinformatics.nl/>
with the correct named graph:
FROM <http://rdf-plantmetwiki.bioinformatics.nl/graph/pathways>
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