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    25 repositories

    • ssbd-bff

      Public
      SSBD-BFF: BioFile Finder datasets for the SSBD:database
      0•3•0•0•Updated May 29, 2026May 29, 2026

    • zallery

      Public
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•4•0•0•Updated May 21, 2026May 21, 2026

    • gide-ro-crate

      Public
      RO Crate metadata files for SSBD:database and SSBD:repository
      1•1•0•0•Updated May 14, 2026May 14, 2026

    • ssbd-ome-ngff

      Public
      SSBD OME-Zarr datasets
      HTML
      •0•0•0•0•Updated Dec 4, 2025Dec 4, 2025

    • ssbd-ontology

      Public
      Creative Commons Attribution 4.0 International
      •0•2•0•0•Updated Aug 7, 2025Aug 7, 2025

    • bd5tobdzarr

      Public
      Converter from BD5 to BD-Zarr
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 21, 2025May 21, 2025

    • QTBD5Viewer

      Public
      A visualizer for BD5-format files
      biologybioinformatics-toolbiosystems
      biologybioinformatics-toolbiosystems
      C++
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • bdz

      Public
      Zarr-based format for storing quantitative biological dynamics data
      Jupyter Notebook
      •
      Apache License 2.0
      •2•7•1•1•Updated Sep 16, 2024Sep 16, 2024

    • ssbd-metadata

      Public
      SSBD metadata
      0•3•0•0•Updated Sep 16, 2024Sep 16, 2024

    • OpenSSBD

      Public
      OpenSSBD Database Engine - for storing and retrieving quantitative data of biological dynamics
      Python
      •
      Other
      •5•2•0•0•Updated Dec 21, 2021Dec 21, 2021

    • BDML-BD5

      Public
      an open format for representing quantitative biological dynamics data
      Jupyter Notebook
      •0•1•0•0•Updated Jun 28, 2021Jun 28, 2021

    • bd5lint

      Public
      This repository contains the source codes for bd5lint, a tool that analyzes BD5 file format and flag syntactic errors and suspicious constructs.
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jan 17, 2021Jan 17, 2021

    • hikarijuku

      Public
      Tutorial for Hikarijuku
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Aug 11, 2020Aug 11, 2020

    • BDML2BD5

      Public
      BDML2BD5 is a converter from BDML file to BD5 file
      C++
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 21, 2020Jul 21, 2020

    • BD5_samples

      Public
      Sample codes for BD5 file format
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Jul 15, 2020Jul 15, 2020

    • bdml2bd5-docker

      Public
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 1, 2020Jul 1, 2020

    • python-bdml

      Public
      Python codes for BDML/BD5
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 29, 2020Jun 29, 2020

    • 4D-cell-nuclear-tracking

      Public
      4D cell nuclear tracking and cell dynamics analysis - a training course
      MATLAB
      •
      GNU General Public License v3.0
      •3•5•0•0•Updated Sep 11, 2019Sep 11, 2019

    • MATLAB_SSBDapi

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Sep 2, 2019Sep 2, 2019

    • EXCEL2CSV

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 5, 2019Jun 5, 2019

    • CombineSearch-OMERO

      Public
      Searching across different OMERO servers
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Apr 2, 2019Apr 2, 2019

    • Py_SSBDapi

      Public
      Python API to access SSBD
      Jupyter Notebook
      •3•0•0•0•Updated Jan 10, 2019Jan 10, 2019

    • SSBD-OMERO_api

      Public
      Python example codes to access SSBD-OMERO API
      Jupyter Notebook
      •0•0•0•0•Updated Feb 12, 2018Feb 12, 2018

    • Java_SSBDapi

      Public
      Java package to access SSBD REST API
      Java
      •1•0•0•0•Updated Nov 17, 2017Nov 17, 2017

    • omero-web

      Public
      Dockerfile to build a ready-to-use OMERO.server in auto-login mode
      Shell
      •1•4•0•0•Updated May 19, 2017May 19, 2017
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