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    • TeX
      GNU General Public License v3.0
      0000Updated Mar 26, 2026Mar 26, 2026
    • singularity container comprising analyses of macrophages infected with Leishmania panamensis.
      TeX
      1000Updated Sep 8, 2025Sep 8, 2025
    • Container recipe for repeating the L.panamensis cure/fail analyses in the host.
      TeX
      GNU General Public License v3.0
      1000Updated Mar 10, 2025Mar 10, 2025
    • dantools

      Public
      Utilities to compare disparate genomes
      Perl
      Other
      2200Updated Dec 5, 2024Dec 5, 2024
    • TeX
      GNU General Public License v3.0
      0000Updated Nov 11, 2024Nov 11, 2024
    • TeX
      0000Updated Sep 23, 2024Sep 23, 2024
    • Emacs Lisp
      GNU General Public License v3.0
      1001Updated May 14, 2024May 14, 2024
    • hpgltools

      Public
      A collection of R functions to aid in host-pathogen genomic research
      R
      Other
      121201Updated May 8, 2024May 8, 2024
    • singularity container comprising the comparison of some clinical strains
      Shell
      1000Updated Apr 24, 2024Apr 24, 2024
    • container recipe to perform analyses examining cutaneous leishmania biopsies with CIDEIM published approximately 202310
      Emacs Lisp
      GNU General Public License v2.0
      2000Updated Apr 24, 2024Apr 24, 2024
    • CYOA

      Public
      Perl
      Other
      2100Updated Dec 11, 2023Dec 11, 2023
    • Some shared information from the TMRC metabolomics experiment
      GNU General Public License v3.0
      1000Updated Jan 19, 2022Jan 19, 2022
    • HTML
      2000Updated Sep 2, 2020Sep 2, 2020
    • Code for submitting co-expression network construction jobs to a cluster and summarizing the results
      Shell
      0000Updated Jun 5, 2019Jun 5, 2019
    • R and Rmarkdown code used across multiple RNA-Seq projects.
      R
      6200Updated Jun 4, 2019Jun 4, 2019
    • Trypanosomatid Regulatory Element Prediction Pipeline
      Python
      0000Updated Apr 21, 2019Apr 21, 2019
    • Functional enrichment analysis of individual and ensemble co-expression networks
      Makefile
      0000Updated Mar 25, 2019Mar 25, 2019
    • TNSeq analyses on Streptococcus pyogenes strain 5448 performed in 2017.
      HTML
      1000Updated Jan 18, 2019Jan 18, 2019
    • Pipeline for determining the 5'UTR spliced leader and 3'UTR poly-A acceptor sites in a collection of RNA-Seq reads
      Python
      4820Updated Nov 15, 2017Nov 15, 2017
    • A relatively minimal de-novo algal RNA assembly.
      Shell
      GNU General Public License v3.0
      0000Updated Nov 10, 2017Nov 10, 2017
    • Transcript annotation package for T. cruzi strain CL Brener Esmeraldo-like haplotype
      R
      0000Updated May 12, 2017May 12, 2017
    • Transcript annotation package for Leishmania major strain Friedlin
      R
      0000Updated May 12, 2017May 12, 2017
    • Genome wide annotations for Trypanosoma cruzi strain Friedlin Esmeraldo-like
      R
      0000Updated May 12, 2017May 12, 2017
    • Visualization and descriptive statistics of Trypanosome gene structure using RNA-Seq data.
      R
      0000Updated May 11, 2017May 11, 2017
    • A simple script for detecting polycistronic transcriptional units (PTUs) in Trypanosomatid genomes.
      Python
      0000Updated Dec 25, 2016Dec 25, 2016
    • Gene structure determination and novel ORF detection using RNA-Seq data
      Python
      0000Updated Nov 28, 2016Nov 28, 2016
    • Shell script to retrieve specific resources (FASTA, GFF, etc.) from TriTrypDB for a given set of species
      Shell
      0000Updated Sep 9, 2016Sep 9, 2016
    • UTR Length, Composition, and Alternative Trans-splicing / Poly-adenylation Analysis
      R
      0000Updated Jul 8, 2016Jul 8, 2016
    • Analysis comparing the use of alternative trans-splicing and alternative-polyadenylation sites across developmental stages in Leishmania major
      0000Updated Feb 2, 2015Feb 2, 2015
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