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    • Rawk

      Public
      A Python package for metabolic pathway local enrichment analysis via random walks on metabolic reaction network.
      Python
      Other
      0000Updated Jul 1, 2026Jul 1, 2026
    • BIFO

      Public
      Biological Information Flow Ontology — propagation transformation rules for heterogeneous biomedical knowledge graphs
      Cypher
      Other
      0210Updated May 24, 2026May 24, 2026
    • First 2026 BIFO paper
      HTML
      0100Updated May 9, 2026May 9, 2026
    • CANTOS

      Public
      R
      0000Updated May 1, 2026May 1, 2026
    • Biological Information Flow Ontology: A Propagation Framework for Biomedical Knowledge Graphs (Paper 0 — Manubot manuscript)
      HTML
      Other
      0000Updated Apr 27, 2026Apr 27, 2026
    • Manubot repo for a spectral null paper
      Shell
      0000Updated Apr 26, 2026Apr 26, 2026
    • Petagraph

      Public
      A repository for the Petagraph project
      Jupyter Notebook
      11640Updated Dec 11, 2025Dec 11, 2025
    • Taylor lab website
      0000Updated Nov 18, 2025Nov 18, 2025
    • A Repository for the Petagraph GraphRAG Pipeline project and app
      Apache License 2.0
      0000Updated Oct 14, 2024Oct 14, 2024
    • HSCLO

      Public
      HSCLO: Homo Sapiens Chromosomal Location Ontology
      R
      MIT License
      0000Updated Aug 13, 2024Aug 13, 2024
    • Courses

      Public
      Creative Commons Zero v1.0 Universal
      0000Updated May 9, 2024May 9, 2024
    • CFDE Data Distillery Project
      Jupyter Notebook
      MIT License
      0400Updated Sep 15, 2023Sep 15, 2023
    • CFDIKG

      Public
      Jupyter Notebook
      MIT License
      1500Updated Jun 27, 2023Jun 27, 2023
    • scedar

      Public
      Single-cell exploratory data analysis for RNA-Seq
      Python
      MIT License
      94010Updated Apr 24, 2021Apr 24, 2021
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