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@TaylorResearchLab Deanne Taylor Research Group

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    14 repositories

    • Rawk

      Public
      A Python package for metabolic pathway local enrichment analysis via random walks on metabolic reaction network.
      Python
      •
      Other
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • BIFO

      Public
      Biological Information Flow Ontology — propagation transformation rules for heterogeneous biomedical knowledge graphs
      Cypher
      •
      Other
      •0•2•1•0•Updated May 24, 2026May 24, 2026

    • bifo-paper-1

      Public
      First 2026 BIFO paper
      HTML
      •0•1•0•0•Updated May 9, 2026May 9, 2026

    • CANTOS

      Public
      R
      •0•0•0•0•Updated May 1, 2026May 1, 2026

    • bifo-paper-0

      Public
      Biological Information Flow Ontology: A Propagation Framework for Biomedical Knowledge Graphs (Paper 0 — Manubot manuscript)
      HTML
      •
      Other
      •0•0•0•0•Updated Apr 27, 2026Apr 27, 2026

    • bifo-spectral-null-paper

      Public
      Manubot repo for a spectral null paper
      Shell
      •0•0•0•0•Updated Apr 26, 2026Apr 26, 2026

    • Petagraph

      Public
      A repository for the Petagraph project
      Jupyter Notebook
      •1•16•4•0•Updated Dec 11, 2025Dec 11, 2025

    • taylor_lab_website

      Public
      Taylor lab website
      0•0•0•0•Updated Nov 18, 2025Nov 18, 2025

    • graph_rag_app

      Public
      A Repository for the Petagraph GraphRAG Pipeline project and app
      Apache License 2.0
      •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • HSCLO

      Public
      HSCLO: Homo Sapiens Chromosomal Location Ontology
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 13, 2024Aug 13, 2024

    • Courses

      Public
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated May 9, 2024May 9, 2024

    • CFDE_DataDistillery

      Public
      CFDE Data Distillery Project
      Jupyter Notebook
      •
      MIT License
      •0•4•0•0•Updated Sep 15, 2023Sep 15, 2023

    • CFDIKG

      Public
      Jupyter Notebook
      •
      MIT License
      •1•5•0•0•Updated Jun 27, 2023Jun 27, 2023

    • scedar

      Public
      Single-cell exploratory data analysis for RNA-Seq
      clustering-algorithmsingle-cell-rna-seq
      clustering-algorithmsingle-cell-rna-seq
      Python
      •
      MIT License
      •9•40•1•0•Updated Apr 24, 2021Apr 24, 2021
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