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@RamanLab Raman Lab, IIT Madras

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    57 repositories

    • ClusterNet

      Public
      One stop for all Clustering
      Python
      •0•0•0•0•Updated Jun 15, 2026Jun 15, 2026

    • Panera

      Public
      MATLAB repository to construct pan-genus metabolic models (PGMM)
      MATLAB
      •1•1•0•0•Updated May 20, 2026May 20, 2026

    • TNBC-single-cell-markers

      Public
      Reproducible code for identifying TIL-based markers from single-cell RNA-seq data of TNBC patients
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 9, 2026May 9, 2026

    • COSMOS

      Public
      Compares monocultures and cocultres in an identical environment to identify the optimal microbial system
      MATLAB
      •0•1•0•0•Updated Apr 27, 2026Apr 27, 2026

    • metagenomic-workshop-2026

      Public
      Metagenomic-workshop-2026
      HTML
      •0•0•0•0•Updated Apr 2, 2026Apr 2, 2026

    • SysBioBook

      Public
      HTML
      •0•0•5•0•Updated Mar 15, 2026Mar 15, 2026

    • Hospital_Microbiome

      Public
      Analysis of microbial interactions in hospital and other built environments
      Jupyter Notebook
      •0•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • FastSL

      Public
      A MATLAB toolbox to rapidly evaluate synthetic lethal sets in organisms using the genome-scale metabolic models
      MATLAB
      •6•7•0•0•Updated Nov 5, 2025Nov 5, 2025

    • community_assembly_for_marine_microbiome

      Public
      Community assembly for marine microbiome
      R
      •1•0•0•1•Updated Oct 2, 2025Oct 2, 2025

    • BenchmCommDetection

      Public
      Contains the python module to implement community detection algos along with the final results obtained from benchmark analysis
      Jupyter Notebook
      •1•0•0•0•Updated Jun 29, 2025Jun 29, 2025

    • spore-to-VO

      Public
      0•0•0•0•Updated May 16, 2025May 16, 2025

    • UNFOLD-Framework

      Public
      Python
      •1•1•0•0•Updated May 12, 2025May 12, 2025

    • SKG_Drug_repurposing

      Public
      Python
      •1•0•0•0•Updated May 10, 2025May 10, 2025

    • Host-Candida-metabolic-modelling

      Public
      MATLAB
      •0•0•0•0•Updated May 9, 2025May 9, 2025

    • minMicrobiome

      Public
      Code for generation of Minimal Microbiomes using a constraint-based approach
      MATLAB
      •
      MIT License
      •2•5•1•0•Updated Mar 23, 2025Mar 23, 2025

    • metquest

      Public
      Enumerating biosynthetic pathways in metabolic networks
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •11•13•0•0•Updated Feb 5, 2025Feb 5, 2025

    • Neobacillus

      Public
      Neobacillus driksii sp. nov. isolated from a Mars 2020 spacecraft assembly facility and genomic potential for lasso peptide production in Neobacillus
      0•0•0•0•Updated Jan 25, 2025Jan 25, 2025

    • CAMP

      Public
      MATLAB
      •0•2•0•0•Updated Dec 3, 2024Dec 3, 2024

    • fbc_curation_matlab

      Public
      fbc_curation contains MATLAB/COBRA helpers for reproducibility of fbc models.
      MATLAB
      •
      GNU Lesser General Public License v3.0
      •2•2•1•0•Updated Aug 29, 2024Aug 29, 2024

    • phoenix-novel-species

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Aug 21, 2024Aug 21, 2024

    • NonLinearAdaptation

      Public
      This repository contains the necessary MATLAB and SIMULINK files for the simulation studies done in the manuscript titled, 'Design Principles for Global, Perfec…
      MATLAB
      •0•1•0•0•Updated May 29, 2024May 29, 2024

    • ISS_Enterobacter

      Public
      Python
      •0•0•0•0•Updated May 16, 2024May 16, 2024

    • DNA-Computing-for-the-Subset-Sum-Problem

      Public
      This repository contains the code I wrote for my undergraduate research project on 'DNA-based computing for the Subset Product Problem', done at IIT Madras.
      Jupyter Notebook
      •1•0•0•0•Updated May 6, 2024May 6, 2024

    • minRerouting

      Public
      Package to understand the compensatory mechanisms performing similar metabolic functions through analysis of Synthetic Lethals
      Jupyter Notebook
      •1•3•7•0•Updated Mar 19, 2024Mar 19, 2024

    • metquest2

      Public
      Enumerating biosynthetic pathways in metabolic networks
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •11•9•0•1•Updated Sep 6, 2023Sep 6, 2023

    • structure-based-drug-design

      Public
      Structure based Drug Design using Distance prediction with Graph Neural Networks - Dual Degree Project
      Jupyter Notebook
      •1•0•0•0•Updated Jun 3, 2023Jun 3, 2023

    • CASTLE

      Public
      HTML
      •0•0•0•0•Updated Jun 2, 2023Jun 2, 2023

    • FastSL-py

      Public
      Python implementation of FastSL
      linear-programmingcomputational-biologyflux-balance-analysis
      linear-programmingcomputational-biologyflux-balance-analysissynthetic-lethality-analysis
      Python
      •
      GNU General Public License v3.0
      •1•0•0•2•Updated May 22, 2023May 22, 2023

    • Robust-Adaptation

      Public
      MATLAB
      •0•0•0•0•Updated Feb 20, 2023Feb 20, 2023

    • co-FSEOF

      Public
      MATLAB
      •1•3•1•0•Updated Jan 23, 2023Jan 23, 2023
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